Escherichia coli strain 593596 SAMN10057753-rid9463433.guided.151

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli strain 593596 (SAMN10057753-rid9463433.guided.151) is a Gram-negative, rod-shaped bacterium that exhibits a facultative anaerobic lifestyle, allowing it to thrive in both aerobic and anaerobic environments. This strain is characterized by its mobility, facilitated by the presence of flagella, and it typically exists in pairs or as singles. E. coli 593596 is classified as mesophilic, with an optimal growth temperature of 37°C. This strain is host-associated, having a diverse range of hosts, including Homo sapiens, various domestic animals such as Gallus gallus (chickens), Bos taurus (cattle), and Sus scrofa (pigs), as well as several other vertebrate species and plants. It participates in a free-living biotic relationship, indicating its adaptability in various environments. E. coli strain 593596 is known for its pathogenicity in humans, being linked to a multitude of health issues, including urinary tract infections (UTIs), gastrointestinal infections, and neonatal meningitis. The strain is also associated with severe conditions such as hemolytic uremic syndrome (HUS) and peritonitis, highlighting its potential impact on both human health and veterinary contexts. The ecological insight from the data indicates that E. coli strain 593596's ability to inhabit a wide range of hosts and its pathogenic potential suggest a significant role in both human and animal health. Its presence in diverse environments underscores the importance of monitoring and managing E. coli in relation to public health and disease prevention strategies.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
Strainstrain 593596 SAMN10057753-rid9463433.guided.151

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli strain 593596 SAMN10057753-rid9463433.guided.151
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Bos taurus
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Escherichia coli strain 593596 SAMN10057753-rid9463433.guided.151,

Gene Summary

Adenine Count

1370210 bp

Thymine Count

1359659 bp

Guanine Count

1361880 bp

Cytosine Count

1378938 bp

Genome Length

5488722 bp

Protein-coding Genes

4966 genes

Non-Coding Genes

365 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Terminase large subunitD4M06_RS24320Not AvailableNegative5035230 - 503733278965.0
Terminase small subunitD4M06_RS24325Not AvailableNegative5037332 - 503782318544.1
Hypothetical proteinD4M06_RS24330Not AvailableNegative5038498 - 50386505768.38
EndopeptidaseD4M06_RS24335Not AvailableNegative5038638 - 503910517098.5
LysinD4M06_RS24340Not AvailableNegative5039102 - 503959917889.5
Holin protein s-like proteinD4M06_RS24345Not AvailableNegative5039599 - 50398147950.74
hypothetical proteinD4M06_RS24350Not AvailablePositive5039957 - 504035515243.7
Hypothetical proteinD4M06_RS24355Not AvailableNegative5040436 - 50405825398.23
Hypothetical proteinD4M06_RS24470Not AvailablePositive5067035 - 50672387455.13
Putative small subunit terminaseD4M06_RS24475Not AvailablePositive5067294 - 506810030459.9

Displaying genes 331 – 340 of 5361 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

Health ConditionRelationReference
Gi diseaseCausesPMC11149725
UtisCausesPMC11434687
Colorectal cancerCausesPMC12198655
Pyogenic liver abscessesCausesPMC12392612
UtiCausesPMC13014981
ColibacillosisCausesPMC13255289
Enteric infectionsCausesPMC13255289
Foodborne infectionsCausesPMC13255289
Clinical mastitisCausesPMC13293316
DiarrheaCausesPMC3035056

Displaying health effects 1 – 10 of 103 in total