Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 593596 SAMN10057753-rid9463433.guided.151 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1370210 bp
Thymine Count
1359659 bp
Guanine Count
1361880 bp
Cytosine Count
1378938 bp
Genome Length
5488722 bp
Protein-coding Genes
4966 genes
Non-Coding Genes
365 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | D4M06_RS09125 | Not Available | Negative | 1969278 - 1969559 | 10304.0 |
| c-di-gmp phosphodiesterase pdec | D4M06_RS09130 | Not Available | Positive | 1969988 - 1971574 | 60744.7 |
| superoxide response transcriptional regulator soxs | D4M06_RS09135 | Not Available | Negative | 1971577 - 1971900 | 12911.6 |
| redox-sensitive transcriptional activator soxr | D4M06_RS09140 | Not Available | Positive | 1971986 - 1972450 | 17150.7 |
| ncs2 family permease | D4M06_RS09145 | Not Available | Positive | 1972996 - 1974345 | 45714.4 |
| na+/h+ antiporter | D4M06_RS09150 | Not Available | Positive | 1974496 - 1976145 | 60527.5 |
| t3ss effector pentapeptide repeat protein espx5 | D4M06_RS09155 | Not Available | Negative | 1976299 - 1977591 | 49623.3 |
| cation/acetate symporter actp | D4M06_RS09160 | Not Available | Negative | 1977771 - 1979420 | 59227.8 |
| duf485 domain-containing protein | D4M06_RS09165 | Not Available | Negative | 1979417 - 1979731 | 11658.3 |
| acetate--coa ligase | D4M06_RS09170 | Not Available | Negative | 1979932 - 1981890 | 72113.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




