Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 593596 SAMN10057753-rid9463433.guided.151 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1370210 bp
Thymine Count
1359659 bp
Guanine Count
1361880 bp
Cytosine Count
1378938 bp
Genome Length
5488722 bp
Protein-coding Genes
4966 genes
Non-Coding Genes
365 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type iii secretion system lee chaperone cesf | D4M06_RS08350 | Not Available | Negative | 1798812 - 1799195 | 14687.5 |
| type iii secretion system lee effector map (rho guanine exchange factor) | D4M06_RS08355 | Not Available | Positive | 1799461 - 1800072 | 22925.3 |
| type iii secretion system lee translocated intimin receptor tir | D4M06_RS08360 | Not Available | Positive | 1800496 - 1802166 | 57823.6 |
| type iii secretion system lee chaperone cest | D4M06_RS08365 | Not Available | Positive | 1802304 - 1802774 | 17681.9 |
| intimin type gamma | D4M06_RS08370 | Not Available | Positive | 1802834 - 1805638 | 101841.0 |
| type iii secretion system lee inner membrane ring protein escd | D4M06_RS08375 | Not Available | Negative | 1805902 - 1807122 | 45261.8 |
| type iii secretion system lee gatekeeper sepl | D4M06_RS08380 | Not Available | Positive | 1807265 - 1808320 | 39954.0 |
| type iii secretion system lee translocon filament protein espa | D4M06_RS08385 | Not Available | Positive | 1808379 - 1808957 | 20575.2 |
| type iii secretion system lee translocon pore-forming subunit espd | D4M06_RS08390 | Not Available | Positive | 1808970 - 1810094 | 39085.5 |
| type iii secretion system lee translocon pore-forming subunit espb | D4M06_RS08395 | Not Available | Positive | 1810115 - 1811053 | 32632.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




