Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 593596 SAMN10057753-rid9463433.guided.151 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1370210 bp
Thymine Count
1359659 bp
Guanine Count
1361880 bp
Cytosine Count
1378938 bp
Genome Length
5488722 bp
Protein-coding Genes
4966 genes
Non-Coding Genes
365 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| mfs transporter | D4M06_RS04955 | Not Available | Positive | 1102716 - 1104080 | 48725.8 |
| nucleotide binding protein yajq | D4M06_RS04960 | Not Available | Negative | 1104208 - 1104699 | 18344.9 |
| 2-dehydropantoate 2-reductase | D4M06_RS04965 | Not Available | Positive | 1104867 - 1105778 | 33849.7 |
| protein deglycase yajl | D4M06_RS04970 | Not Available | Positive | 1105741 - 1106331 | 20807.3 |
| trna 4-thiouridine(8) synthase thii | D4M06_RS04975 | Not Available | Negative | 1106385 - 1107833 | 55006.4 |
| exodeoxyribonuclease vii small subunit | D4M06_RS04980 | Not Available | Positive | 1108039 - 1108281 | 8952.42 |
| (2e,6e)-farnesyl diphosphate synthase | D4M06_RS04985 | Not Available | Positive | 1108281 - 1109180 | 32133.4 |
| 1-deoxy-d-xylulose-5-phosphate synthase | D4M06_RS04990 | Not Available | Positive | 1109205 - 1111067 | 67636.9 |
| 1-deoxyxylulose-5-phosphate synthase yajo | D4M06_RS04995 | Not Available | Positive | 1111122 - 1112096 | 36438.2 |
| t3ss effector pentapeptide repeat protein espy3 | D4M06_RS05000 | Not Available | Positive | 1112327 - 1113898 | 60955.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




