Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 389639 SAMN09371778-rid9461513.guided.161 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1323848 bp
Thymine Count
1307626 bp
Guanine Count
1316056 bp
Cytosine Count
1339205 bp
Genome Length
5306567 bp
Protein-coding Genes
4922 genes
Non-Coding Genes
195 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| c4-type zinc finger protein ybii | E9D03_RS03220 | Not Available | Positive | 724469 - 724735 | 9818.45 |
| duf1471 domain-containing protein | E9D03_RS03225 | Not Available | Positive | 725000 - 725260 | 8538.17 |
| malate/lactate/ureidoglycolate dehydrogenase | E9D03_RS03230 | Not Available | Negative | 725489 - 726574 | 38896.3 |
| dna-binding protein ybib | E9D03_RS03235 | Not Available | Negative | 726715 - 727677 | 35186.9 |
| atp-dependent dna helicase ding | E9D03_RS03240 | Not Available | Negative | 727705 - 729855 | 81463.9 |
| type iii secretion system effector espx2 | E9D03_RS03245 | Not Available | Negative | 730139 - 732151 | 76850.2 |
| atp-dependent rna helicase rhle | E9D03_RS03250 | Not Available | Negative | 732759 - 734126 | 50049.5 |
| dna-binding transcriptional regulator cecr | E9D03_RS03255 | Not Available | Positive | 734355 - 735026 | 25018.1 |
| secretion protein hlyd | E9D03_RS03260 | Not Available | Positive | 735026 - 736024 | 36418.9 |
| abc transporter atp-binding protein | E9D03_RS03265 | Not Available | Positive | 736017 - 737753 | 63163.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




