Escherichia coli strain 389639 SAMN09371778-rid9461513.guided.161

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli strain 389639 (SAMN09371778-rid9461513.guided.161) is a Gram-negative bacterium that exhibits a rod shape and is characterized by its mobility, facilitated by the presence of flagella. This strain is classified as a facultative anaerobe, allowing it to thrive in both aerobic and anaerobic environments. It typically resides in host-associated habitats, indicating a close relationship with various organisms. The optimal growth temperature for this strain is 37°C, and it falls within the mesophilic temperature range. It possesses a singular replicon and is surrounded by two membranes, which is typical for Gram-negative bacteria. E. coli strain 389639 is known to have free-living capabilities, indicating that it can survive independently outside of host organisms. This strain has a wide range of hosts, including Homo sapiens, Gallus gallus, Bos taurus, and various other vertebrates and invertebrates. Its pathogenicity in humans is notable, as it is associated with several health issues, including urinary tract infections, gastrointestinal infections, neonatal meningitis, and other serious conditions such as hemolytic uremic syndrome and septicemia. The presence of E. coli strain 389639 in diverse hosts, including mammals, birds, and insects, underscores its ecological adaptability and potential role in various biotic relationships. Its significant health implications in humans and livestock highlight the importance of monitoring and understanding this strain within both clinical and environmental contexts.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
Strainstrain 389639 SAMN09371778-rid9461513.guided.161

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli strain 389639 SAMN09371778-rid9461513.guided.161
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Bos taurus
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Escherichia coli strain 389639 SAMN09371778-rid9461513.guided.161,

Gene Summary

Adenine Count

1323848 bp

Thymine Count

1307626 bp

Guanine Count

1316056 bp

Cytosine Count

1339205 bp

Genome Length

5306567 bp

Protein-coding Genes

4922 genes

Non-Coding Genes

195 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
fatty acid metabolism transcriptional regulator fadrE9D03_RS22585Not AvailablePositive4776460 - 477717926970.2
spovr family proteinE9D03_RS22590Not AvailableNegative4777231 - 477876360803.1
d-amino acid dehydrogenaseE9D03_RS22595Not AvailablePositive4779126 - 478042447610.1
catabolic alanine racemase dadxE9D03_RS22600Not AvailablePositive4780434 - 478150438861.0
hypothetical proteinE9D03_RS22705Not AvailablePositive4797151 - 479754915243.7
is66 family insertion sequence hypothetical proteinE9D03_RS22710Not AvailablePositive4797903 - 479857725602.9
is66 family insertion sequence element accessory protein tnpbE9D03_RS22715Not AvailablePositive4798574 - 479892113043.2
ail/lom family proteinE9D03_RS22730Not AvailableNegative4801243 - 480179120384.5
hypothetical proteinE9D03_RS22735Not AvailableNegative4802364 - 48025375513.67
shet2/espl2 family type iii secretion system effector toxinE9D03_RS22745Not AvailablePositive4804771 - 480642062159.2

Displaying genes 4491 – 4500 of 5152 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

Health ConditionRelationReference
Gi diseaseCausesPMC11149725
UtisCausesPMC11434687
Colorectal cancerCausesPMC12198655
Pyogenic liver abscessesCausesPMC12392612
UtiCausesPMC13014981
ColibacillosisCausesPMC13255289
Enteric infectionsCausesPMC13255289
Foodborne infectionsCausesPMC13255289
Clinical mastitisCausesPMC13293316
DiarrheaCausesPMC3035056

Displaying health effects 1 – 10 of 103 in total