Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 389639 SAMN09371778-rid9461513.guided.161 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1323848 bp
Thymine Count
1307626 bp
Guanine Count
1316056 bp
Cytosine Count
1339205 bp
Genome Length
5306567 bp
Protein-coding Genes
4922 genes
Non-Coding Genes
195 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| intimin type gamma | E9D03_RS21985 | Not Available | Negative | 4658539 - 4661343 | 101841.0 |
| type iii secretion system lee chaperone cest | E9D03_RS21990 | Not Available | Negative | 4661403 - 4661873 | 17681.9 |
| type iii secretion system lee translocated intimin receptor tir | E9D03_RS21995 | Not Available | Negative | 4662011 - 4663681 | 57823.6 |
| type iii secretion system lee effector map (rho guanine exchange factor) | E9D03_RS22000 | Not Available | Negative | 4664105 - 4664716 | 22925.3 |
| type iii secretion system lee chaperone cesf | E9D03_RS22005 | Not Available | Positive | 4664982 - 4665365 | 14687.5 |
| type iii secretion system lee effector esph | E9D03_RS22010 | Not Available | Negative | 4665563 - 4666069 | 19283.0 |
| type iii secretion system lee ring protein escq | E9D03_RS22015 | Not Available | Negative | 4666100 - 4667017 | 34894.7 |
| type iii secretion system lee needle length regulator escp | E9D03_RS22020 | Not Available | Negative | 4666980 - 4667396 | 16548.9 |
| type iii secretion protein | E9D03_RS22025 | Not Available | Negative | 4667389 - 4667709 | 12363.7 |
| type iii secretion system lee atpase escn | E9D03_RS22030 | Not Available | Negative | 4667769 - 4669109 | 48819.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




