Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 389639 SAMN09371778-rid9461513.guided.161 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1323848 bp
Thymine Count
1307626 bp
Guanine Count
1316056 bp
Cytosine Count
1339205 bp
Genome Length
5306567 bp
Protein-coding Genes
4922 genes
Non-Coding Genes
195 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type vi secretion system-associated protein tago | E9D03_RS21930 | Not Available | Positive | 4649783 - 4650526 | 26416.7 |
| type iii secretion system lee effector espf | E9D03_RS21940 | Not Available | Negative | 4651859 - 4652084 | 7632.05 |
| type iii secretion system lee needle protein cochaperone escg | E9D03_RS21945 | Not Available | Negative | 4652169 - 4652447 | 10280.4 |
| type iii secretion system lee needle major subunit escf | E9D03_RS21950 | Not Available | Negative | 4652453 - 4652674 | 8127.69 |
| type iii secretion system lee chaperone cesd2 | E9D03_RS21955 | Not Available | Negative | 4652710 - 4653117 | 15813.8 |
| type iii secretion system lee translocon pore-forming subunit espb | E9D03_RS21960 | Not Available | Negative | 4653124 - 4654062 | 32632.4 |
| type iii secretion system lee translocon pore-forming subunit espd | E9D03_RS21965 | Not Available | Negative | 4654083 - 4655207 | 39085.5 |
| type iii secretion system lee translocon filament protein espa | E9D03_RS21970 | Not Available | Negative | 4655220 - 4655798 | 20575.2 |
| type iii secretion system lee gatekeeper sepl | E9D03_RS21975 | Not Available | Negative | 4655857 - 4656912 | 39954.0 |
| type iii secretion system lee inner membrane ring protein escd | E9D03_RS21980 | Not Available | Positive | 4657055 - 4658275 | 45261.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




