Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 389639 SAMN09371778-rid9461513.guided.161 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1323848 bp
Thymine Count
1307626 bp
Guanine Count
1316056 bp
Cytosine Count
1339205 bp
Genome Length
5306567 bp
Protein-coding Genes
4922 genes
Non-Coding Genes
195 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf494 domain-containing protein | E9D03_RS21830 | Not Available | Positive | 4627677 - 4628150 | 18484.2 |
| hypothetical protein | E9D03_RS21835 | Not Available | Positive | 4628179 - 4628721 | 19872.0 |
| l-threonylcarbamoyladenylate synthase type 1 tsac | E9D03_RS21840 | Not Available | Positive | 4628726 - 4629298 | 20669.8 |
| shikimate dehydrogenase | E9D03_RS21845 | Not Available | Positive | 4629303 - 4630121 | 29296.2 |
| duf1488 domain-containing protein | E9D03_RS21850 | Not Available | Positive | 4630118 - 4630375 | 9977.52 |
| gamma carbonic anhydrase family protein | E9D03_RS21855 | Not Available | Negative | 4630351 - 4630905 | 20246.3 |
| rhs repeat protein | E9D03_RS21860 | Not Available | Negative | 4631156 - 4633827 | 98479.9 |
| type vi secretion system tip protein vgrg | E9D03_RS21865 | Not Available | Negative | 4633903 - 4636044 | 79573.0 |
| hcp family type vi secretion system effector | E9D03_RS21870 | Not Available | Negative | 4636254 - 4636772 | 19256.8 |
| type vi secretion system contractile sheath small subunit | E9D03_RS21875 | Not Available | Positive | 4637469 - 4637969 | 18070.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




