Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 389639 SAMN09371778-rid9461513.guided.161 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1323848 bp
Thymine Count
1307626 bp
Guanine Count
1316056 bp
Cytosine Count
1339205 bp
Genome Length
5306567 bp
Protein-coding Genes
4922 genes
Non-Coding Genes
195 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hlyc/corc family transporter | E9D03_RS21260 | Not Available | Positive | 4537879 - 4539165 | 48075.3 |
| nucleotide exchange factor grpe | E9D03_RS21265 | Not Available | Negative | 4539220 - 4539813 | 21813.1 |
| nad(+) kinase | E9D03_RS21270 | Not Available | Positive | 4539936 - 4540814 | 32598.3 |
| dna repair protein recn | E9D03_RS21275 | Not Available | Positive | 4540900 - 4542561 | 61485.2 |
| outer membrane protein assembly factor bame | E9D03_RS21280 | Not Available | Positive | 4542710 - 4543051 | 12302.8 |
| rnfh family protein | E9D03_RS21285 | Not Available | Negative | 4543113 - 4543403 | 10790.0 |
| type ii toxin-antitoxin system toxin rata | E9D03_RS21290 | Not Available | Negative | 4543393 - 4543869 | 17743.7 |
| ssra-binding protein smpb | E9D03_RS21295 | Not Available | Positive | 4544001 - 4544483 | 18270.1 |
| Tmrna,resume consensus sequence (at 83): aatagtcgcaaacgacga | Not Available | Not Available | Positive | 4544698 - 4545060 | Not Available |
| dna damage-inducible protein dini | E9D03_RS21305 | Not Available | Positive | 4545329 - 4545577 | 9391.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




