Escherichia coli strain 389639 SAMN09371778-rid9461513.guided.161

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli strain 389639 (SAMN09371778-rid9461513.guided.161) is a Gram-negative bacterium that exhibits a rod shape and is characterized by its mobility, facilitated by the presence of flagella. This strain is classified as a facultative anaerobe, allowing it to thrive in both aerobic and anaerobic environments. It typically resides in host-associated habitats, indicating a close relationship with various organisms. The optimal growth temperature for this strain is 37°C, and it falls within the mesophilic temperature range. It possesses a singular replicon and is surrounded by two membranes, which is typical for Gram-negative bacteria. E. coli strain 389639 is known to have free-living capabilities, indicating that it can survive independently outside of host organisms. This strain has a wide range of hosts, including Homo sapiens, Gallus gallus, Bos taurus, and various other vertebrates and invertebrates. Its pathogenicity in humans is notable, as it is associated with several health issues, including urinary tract infections, gastrointestinal infections, neonatal meningitis, and other serious conditions such as hemolytic uremic syndrome and septicemia. The presence of E. coli strain 389639 in diverse hosts, including mammals, birds, and insects, underscores its ecological adaptability and potential role in various biotic relationships. Its significant health implications in humans and livestock highlight the importance of monitoring and understanding this strain within both clinical and environmental contexts.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
Strainstrain 389639 SAMN09371778-rid9461513.guided.161

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli strain 389639 SAMN09371778-rid9461513.guided.161
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Bos taurus
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Escherichia coli strain 389639 SAMN09371778-rid9461513.guided.161,

Gene Summary

Adenine Count

1323848 bp

Thymine Count

1307626 bp

Guanine Count

1316056 bp

Cytosine Count

1339205 bp

Genome Length

5306567 bp

Protein-coding Genes

4922 genes

Non-Coding Genes

195 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
flagella biosynthesis chaperone flijE9D03_RS20205Not AvailableNegative4330623 - 433106617325.6
flagellum-specific atp synthase fliiE9D03_RS20210Not AvailableNegative4331085 - 433245849318.6
flagellar assembly protein flihE9D03_RS20215Not AvailableNegative4332520 - 433320625059.6
flagellar motor switch protein fligE9D03_RS20220Not AvailableNegative4333199 - 433419436778.2
flagellar basal body m-ring protein flifE9D03_RS20225Not AvailableNegative4334187 - 433584560712.8
flagellar hook-basal body complex protein flieE9D03_RS20230Not AvailablePositive4336060 - 433637411127.5
t3ss effector leucine-rich repeat protein espr4E9D03_RS20235Not AvailablePositive4336723 - 433786243268.0
gnat family n-acetyltransferaseE9D03_RS20240Not AvailableNegative4338000 - 43381525706.6
mfs transporterE9D03_RS20395Not AvailableNegative4355480 - 435672746859.2
aminoimidazole riboside kinaseE9D03_RS20400Not AvailableNegative4356799 - 435771333109.7

Displaying genes 4061 – 4070 of 5152 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

Health ConditionRelationReference
Gi diseaseCausesPMC11149725
UtisCausesPMC11434687
Colorectal cancerCausesPMC12198655
Pyogenic liver abscessesCausesPMC12392612
UtiCausesPMC13014981
ColibacillosisCausesPMC13255289
Enteric infectionsCausesPMC13255289
Foodborne infectionsCausesPMC13255289
Clinical mastitisCausesPMC13293316
DiarrheaCausesPMC3035056

Displaying health effects 1 – 10 of 103 in total