Pseudidiomarina gelatinasegens strain R04H25

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Alteromonadales

Family

Idiomarinaceae

Genus

Pseudidiomarina

Description

Pseudidiomarina gelatinasegens strain R04H25 is characterized by having a single replicon, indicating a streamlined genomic structure that may contribute to its biological efficiency. The strain is cataloged under the accession number RSFE00000000.1, which allows for its identification and further study within scientific databases. As a member of the Pseudidiomarina genus, P. gelatinasegens is likely to exhibit specific metabolic capabilities, particularly in gelatin degradation, suggested by its name. This trait may position the strain as an important player in the degradation of organic materials in marine environments, where gelatinous compounds are prevalent. The ecological implications of Pseudidiomarina gelatinasegens strain R04H25 may extend to nutrient cycling in aquatic ecosystems, particularly in the breakdown of complex organic matter. By efficiently degrading gelatinous substances, this strain could facilitate the recycling of nutrients, thereby supporting microbial diversity and productivity in marine habitats. Understanding the metabolic pathways and ecological roles of such strains can provide insights into their contributions to ecosystem health and stability.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAlteromonadales
FamilyIdiomarinaceae
GenusPseudidiomarina
SpeciesPseudidiomarina gelatinasegens
Strainstrain R04H25

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudidiomarina gelatinasegens strain R04H25

Gene Summary

Adenine Count

640993 bp

Thymine Count

640407 bp

Guanine Count

579356 bp

Cytosine Count

612297 bp

Genome Length

2474889 bp

Protein-coding Genes

2293 genes

Non-Coding Genes

61 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
holliday junction branch migration protein ruvaEGC76_01280Not AvailableNegative255719 - 25633922229.2
crossover junction endodeoxyribonuclease ruvcEGC76_01285Not AvailableNegative256336 - 25686318468.6
aspartate--trna ligaseEGC76_01290Not AvailableNegative256889 - 25865565714.9
carboxy-s-adenosyl-l-methionine synthase cmoaEGC76_01295Not AvailablePositive258830 - 25956127541.0
trna 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase cmobEGC76_01300Not AvailablePositive259589 - 26056937211.5
xre family transcriptional regulatorEGC76_01305Not AvailableNegative260789 - 26110011935.4
utp--glucose-1-phosphate uridylyltransferase galuEGC76_01310Not AvailableNegative261211 - 26210732154.2
mfs transporterEGC76_01315Not AvailableNegative262119 - 26361554458.2
vacj family lipoproteinEGC76_01320Not AvailableNegative263712 - 26444326860.5
c-type cytochrome biogenesis protein ccmiEGC76_01325Not AvailableNegative264489 - 26568844632.2

Displaying genes 261 – 270 of 2353 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.