Pectobacterium polaris strain F109 KHDHEBDM_60

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Pectobacteriaceae

Genus

Pectobacterium

Description

Pectobacterium polaris strain F109 KHDHEBDM_60 is a Gram-negative bacterium characterized by the presence of flagella, which facilitates motility. This strain contains a single replicon, indicating a streamlined genetic structure that may contribute to its adaptability and survival in various environments. The genomic data for this strain is accessible under the accession number RRYS00000000.1. As a member of the Pectobacterium genus, P. polaris is known for its role in plant pathogenesis, particularly in cold environments. The presence of flagella may enhance its ability to colonize host plants and spread within the plant tissue, which is crucial for its pathogenicity. Understanding the traits of P. polaris strain F109 KHDHEBDM_60 provides insights into its ecological niche and potential impact on agricultural systems, particularly in regions with colder climates where it may thrive and cause disease in crops. These characteristics highlight the significance of motility and genetic organization in the ecological interactions of Pectobacterium polaris. Further research could elucidate the mechanisms by which this strain adapts to its environment and its interactions with host plants, contributing to our understanding of its role in plant health and agricultural productivity.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyPectobacteriaceae
GenusPectobacterium
SpeciesPectobacterium polaris
Strainstrain F109 KHDHEBDM_60

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pectobacterium polaris strain F109 KHDHEBDM_60


Gene Summary

Adenine Count

1179714 bp

Thymine Count

1155909 bp

Guanine Count

1234829 bp

Cytosine Count

1288784 bp

Genome Length

4863594 bp

Protein-coding Genes

4176 genes

Non-Coding Genes

196 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
gamma-glutamyltransferaseKHDHEBDM_02956Not AvailableNegative3242300 - 324409363193.3
acetylserine transporterKHDHEBDM_02957Not AvailableNegative3244171 - 324508232815.9
hypothetical proteinKHDHEBDM_02958Not AvailableNegative3245243 - 324645144341.8
valine--pyruvate transaminaseKHDHEBDM_02959Not AvailablePositive3246844 - 324809446456.5
hypothetical proteinKHDHEBDM_02960Not AvailableNegative3247969 - 32482329985.36
hcp1 family type vi secretion system effectorKHDHEBDM_02961Not AvailablePositive3248760 - 324927819048.5
type iv secretion protein rhsKHDHEBDM_02962Not AvailablePositive3249370 - 325119966871.5
hypothetical proteinKHDHEBDM_02963Not AvailablePositive3251228 - 325167116198.0
type iv secretion protein rhsKHDHEBDM_02964Not AvailablePositive3251664 - 3255863157114.0
hypothetical proteinKHDHEBDM_02965Not AvailablePositive3255875 - 325631817668.3

Displaying genes 2971 – 2980 of 4369 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.