Pectobacterium polaris strain F109 KHDHEBDM_60

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Pectobacteriaceae

Genus

Pectobacterium

Description

Pectobacterium polaris strain F109 KHDHEBDM_60 is a Gram-negative bacterium characterized by the presence of flagella, which facilitates motility. This strain contains a single replicon, indicating a streamlined genetic structure that may contribute to its adaptability and survival in various environments. The genomic data for this strain is accessible under the accession number RRYS00000000.1. As a member of the Pectobacterium genus, P. polaris is known for its role in plant pathogenesis, particularly in cold environments. The presence of flagella may enhance its ability to colonize host plants and spread within the plant tissue, which is crucial for its pathogenicity. Understanding the traits of P. polaris strain F109 KHDHEBDM_60 provides insights into its ecological niche and potential impact on agricultural systems, particularly in regions with colder climates where it may thrive and cause disease in crops. These characteristics highlight the significance of motility and genetic organization in the ecological interactions of Pectobacterium polaris. Further research could elucidate the mechanisms by which this strain adapts to its environment and its interactions with host plants, contributing to our understanding of its role in plant health and agricultural productivity.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyPectobacteriaceae
GenusPectobacterium
SpeciesPectobacterium polaris
Strainstrain F109 KHDHEBDM_60

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pectobacterium polaris strain F109 KHDHEBDM_60, whole genome

Gene Summary

Adenine Count

1179714 bp

Thymine Count

1155909 bp

Guanine Count

1234829 bp

Cytosine Count

1288784 bp

Genome Length

4863594 bp

Protein-coding Genes

4176 genes

Non-Coding Genes

196 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
mrna interferase higbKHDHEBDM_02258Not AvailableNegative2469387 - 246969812451.0
type i-e crispr-associated endoribonuclease cas2KHDHEBDM_02259Not AvailableNegative2473185 - 247347811106.4
subtype i-e crispr-associated endonuclease cas1KHDHEBDM_02260Not AvailableNegative2473479 - 247439633200.2
type i-e crispr-associated protein cas6/cse3/caseKHDHEBDM_02261Not AvailableNegative2474424 - 247507124386.1
type i-e crispr-associated protein cas5/casdKHDHEBDM_02262Not AvailableNegative2475071 - 247580527702.7
type i-e crispr-associated protein cas7/cse4/cascKHDHEBDM_02263Not AvailableNegative2475815 - 247688238953.9
type i-e crispr-associated protein cse2/casbKHDHEBDM_02264Not AvailableNegative2476886 - 247753324092.5
type i-e crispr-associated protein cse1/casaKHDHEBDM_02265Not AvailableNegative2477526 - 247908558256.3
transcriptional regulatorKHDHEBDM_02266Not AvailablePositive2479947 - 248042017817.1
crispr-associated helicase/endonuclease cas3KHDHEBDM_02267Not AvailableNegative2480410 - 2483127101873.0

Displaying genes 2331 – 2340 of 4369 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.