Pseudoxanthomonas sp. SGD-10 1090

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Lysobacteraceae

Genus

Pseudoxanthomonas

Description

Pseudoxanthomonas sp. SGD-10 1090 is characterized as a rod-shaped bacterium. It possesses a single replicon, which suggests a streamlined genomic organization potentially advantageous for its adaptability and survival in various environments. The genomic data for this organism is cataloged under the accession number RRYL00000000.1, providing a reference for researchers interested in its genetic characteristics and potential applications. The rod shape of Pseudoxanthomonas sp. SGD-10 1090 may influence its motility and interaction with its environment, allowing it to navigate through diverse substrates and possibly engage in various ecological roles. Rod-shaped bacteria are often associated with efficient nutrient uptake and can be found in numerous habitats, indicating a potential versatility in ecological niches. Investigating the traits of Pseudoxanthomonas sp. SGD-10 1090 could provide insights into its functional capabilities within microbial communities. Its single replicon may reflect evolutionary adaptations that enhance its resilience or competitive edge in specific environments. Understanding the ecological roles of such bacteria can contribute to broader knowledge about microbial diversity and function in ecosystems, particularly in relation to nutrient cycling and biogeochemical processes.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyLysobacteraceae
GenusPseudoxanthomonas
SpeciesPseudoxanthomonas sp. SGD-10
Strain1090

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudoxanthomonas sp. SGD-10 1090, whole genome shotgun sequence.

Gene Summary

Adenine Count

1069322 bp

Thymine Count

1075077 bp

Guanine Count

1566581 bp

Cytosine Count

1582600 bp

Genome Length

5378430 bp

Protein-coding Genes

5141 genes

Non-Coding Genes

93 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ggdef domain-containing proteinEIM50_01740Not AvailablePositive378557 - 38004753331.7
ump kinaseEIM50_01745Not AvailablePositive380124 - 38084625959.8
ribosome recycling factorEIM50_01750Not AvailablePositive380982 - 38153920317.5
di-trans,poly-cis-decaprenylcistransferaseEIM50_01755Not AvailablePositive381556 - 38231427907.3
phosphatidate cytidylyltransferaseEIM50_01760Not AvailablePositive382311 - 38317429396.7
1-deoxy-d-xylulose-5-phosphate reductoisomeraseEIM50_01765Not AvailablePositive383189 - 38441542050.9
rip metalloprotease rsepEIM50_01770Not AvailablePositive384408 - 38576648655.4
outer membrane protein assembly factor bamaEIM50_01775Not AvailablePositive385835 - 38823789355.0
trna pseudouridine(13) synthase trudEIM50_01780Not AvailableNegative388410 - 38946837730.2
2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthaseEIM50_01785Not AvailableNegative389477 - 38997117172.8

Displaying genes 391 – 400 of 5234 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.