Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain UMB6454 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1267645 bp
Thymine Count
1257236 bp
Guanine Count
1270293 bp
Cytosine Count
1313882 bp
Genome Length
5110933 bp
Protein-coding Genes
4626 genes
Non-Coding Genes
338 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DU333_25210 | Not Available | Negative | 5044928 - 5045647 | 27958.8 |
| peptidase m35 | DU333_25215 | Not Available | Negative | 5045700 - 5046461 | 29461.0 |
| type vi secretion system tip protein vgrg | DU333_25220 | Not Available | Negative | 5046451 - 5047743 | 47056.2 |
| hypothetical protein | DU333_25225 | Not Available | Negative | 5047757 - 5047955 | 7459.97 |
| hcp family type vi secretion system effector | DU333_25230 | Not Available | Negative | 5048176 - 5048694 | 19191.7 |
| type vi secretion system contractile sheath small subunit | DU333_25235 | Not Available | Positive | 5049400 - 5049903 | 18438.2 |
| type vi secretion system contractile sheath large subunit | DU333_25240 | Not Available | Positive | 5049926 - 5051410 | 55658.9 |
| type vi secretion system baseplate subunit tsse | DU333_25245 | Not Available | Positive | 5051415 - 5051840 | 15986.8 |
| type vi secretion system baseplate subunit tssf | DU333_25250 | Not Available | Positive | 5051846 - 5053687 | 70805.8 |
| type vi secretion system baseplate subunit tssg | DU333_25255 | Not Available | Positive | 5053651 - 5054700 | 39103.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




