Escherichia coli strain UMB6454

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli strain UMB6454 is a Gram-negative, rod-shaped bacterium that exhibits a facultative anaerobic lifestyle, capable of growth in both aerobic and anaerobic environments. Its optimal growth temperature is 37°C, placing it firmly within the mesophilic temperature range. UMB6454 can exist as single cells or in pairs, and it possesses flagella, enabling mobility. This strain is notably associated with a diverse range of hosts, including Homo sapiens (humans), Gallus gallus (chickens), Bos taurus (cattle), and several other mammals, birds, and even plants such as Solanum lycopersicum (tomatoes) and Brassica oleracea var. italica (broccoli). It demonstrates a free-living biotic relationship, further emphasizing its adaptability across various ecological niches. E. coli UMB6454 is associated with numerous health effects, particularly urinary tract infections (UTIs), gastrointestinal infections, and severe conditions such as neonatal meningitis and hemolytic uremic syndrome (HUS). Its pathogenicity in humans highlights its role as a significant opportunistic pathogen, capable of causing a wide range of diseases, from mild diarrhea to severe systemic infections. The diverse host range and the strain's ability to thrive in various environments suggest a robust ecological adaptability, which may facilitate its transmission and persistence in different settings. This adaptability underscores the importance of monitoring E. coli strains like UMB6454, as they can impact both human health and agricultural systems through foodborne infections and animal disease.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
Strainstrain UMB6454

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli strain UMB6454
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Bos taurus
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Escherichia coli strain UMB6454 NODE_68_length_666_cov_209.573284,

Gene Summary

Adenine Count

1267645 bp

Thymine Count

1257236 bp

Guanine Count

1270293 bp

Cytosine Count

1313882 bp

Genome Length

5110933 bp

Protein-coding Genes

4626 genes

Non-Coding Genes

338 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Repressor protein ciDU333_21295Not AvailablePositive4271340 - 427190921196.3
hypothetical proteinDU333_21300Not AvailablePositive4271925 - 42721166805.36
Tyrosine-type recombinase/integraseDU333_21305Not AvailablePositive4272305 - 427335739973.7
AttrNot AvailableNot AvailablePositive4277733 - 4277745Not Available
23s ribosomal rnaNot AvailableNot AvailablePositive94 - 3018Not Available
helix-turn-helix domain-containing proteinDU333_00005Not AvailableNegative1 - 2268735.65
transposaseDU333_00010Not AvailablePositive372 - 5516800.19
hypothetical proteinDU333_00015Not AvailableNegative528 - 7559039.15
hypothetical proteinDU333_00020Not AvailableNegative777 - 115413889.7
hypothetical proteinDU333_00025Not AvailablePositive1081 - 134110208.4

Displaying genes 331 – 340 of 4970 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

Health ConditionRelationReference
Gi diseaseCausesPMC11149725
UtisCausesPMC11434687
Colorectal cancerCausesPMC12198655
Pyogenic liver abscessesCausesPMC12392612
UtiCausesPMC13014981
ColibacillosisCausesPMC13255289
Enteric infectionsCausesPMC13255289
Foodborne infectionsCausesPMC13255289
Clinical mastitisCausesPMC13293316
DiarrheaCausesPMC3035056

Displaying health effects 1 – 10 of 103 in total