Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain FWSEC0542 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1428529 bp
Thymine Count
1431449 bp
Guanine Count
1427846 bp
Cytosine Count
1432144 bp
Genome Length
5743659 bp
Protein-coding Genes
5479 genes
Non-Coding Genes
336 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | C9309_16615 | Not Available | Positive | 3381711 - 3381800 | 3267.02 |
| type iii secretion system effector e3 ubiquitin ligase nlel | C9309_16620 | Not Available | Positive | 3381820 - 3384168 | 87551.5 |
| duf4765 family protein | C9309_16625 | Not Available | Positive | 3384760 - 3388161 | 129928.0 |
| type iii secretion protein gogb | C9309_16630 | Not Available | Negative | 3388538 - 3389899 | 50978.1 |
| Tmrna,resume consensus sequence (at 83): aatagtcgcaaacgacga | Not Available | Not Available | Positive | 3391076 - 3391438 | Not Available |
| ssra-binding protein smpb | C9309_16645 | Not Available | Negative | 3391653 - 3392135 | 18270.1 |
| ubiquinone-binding protein | C9309_16650 | Not Available | Positive | 3392267 - 3392743 | 17743.7 |
| rnfh family protein | C9309_16655 | Not Available | Positive | 3392733 - 3393023 | 10790.0 |
| outer membrane protein assembly factor bame | C9309_16660 | Not Available | Negative | 3393085 - 3393426 | 12302.8 |
| dna repair protein recn | C9309_16665 | Not Available | Negative | 3393575 - 3395236 | 61400.1 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





