Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain FWSEC0542 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1428529 bp
Thymine Count
1431449 bp
Guanine Count
1427846 bp
Cytosine Count
1432144 bp
Genome Length
5743659 bp
Protein-coding Genes
5479 genes
Non-Coding Genes
336 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tir chaperone family protein | C9309_12875 | Not Available | Negative | 2641488 - 2641847 | 13781.4 |
| t3ss effector protein map | C9309_12880 | Not Available | Positive | 2642098 - 2642709 | 22643.2 |
| translocated intimin receptor tir | C9309_12885 | Not Available | Positive | 2643156 - 2644772 | 55438.1 |
| type iii secretion system lee chaperone cest | C9309_12890 | Not Available | Positive | 2644905 - 2645375 | 17622.8 |
| intimin | C9309_12895 | Not Available | Positive | 2645436 - 2648255 | 101690.0 |
| type iii secretion system lee inner membrane ring protein escd | C9309_12900 | Not Available | Negative | 2648470 - 2649690 | 45226.7 |
| type iii secretion system lee gatekeeper sepl | C9309_12905 | Not Available | Positive | 2649833 - 2650888 | 40007.9 |
| type iii secretion system lee translocon filament protein espa | C9309_12910 | Not Available | Positive | 2650946 - 2651524 | 20535.1 |
| secretion protein espd | C9309_12915 | Not Available | Positive | 2651537 - 2652679 | 39621.0 |
| eaeb | C9309_12920 | Not Available | Positive | 2652700 - 2653644 | 33221.9 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





