Escherichia coli strain FWSEC0542

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli strain FWSEC0542 is a Gram-negative, rod-shaped bacterium that exhibits mobility through the presence of flagella. This strain is categorized as a facultative anaerobe, allowing it to thrive in both aerobic and anaerobic environments, with an optimal growth temperature of 37°C, placing it within the mesophilic temperature range. FWSEC0542 has a unique habitat that is host-associated, indicating its presence in various biological hosts. The strain displays a free-living biotic relationship and has been identified in a wide array of hosts, including Homo sapiens, various livestock (e.g., Bos taurus, Sus scrofa), and other vertebrates as well as certain plants like Solanum lycopersicum and Brassica oleracea var. italica. This diverse range of hosts suggests a significant ecological versatility and interaction within different ecosystems. FWSEC0542 is known for its pathogenicity in humans, being associated with numerous health effects such as urinary tract infections (UTIs), gastrointestinal infections, and severe conditions including neonatal meningitis and hemolytic uremic syndrome (HUS). The presence of this strain in multiple host species underscores its potential impact on both human health and veterinary medicine. Given its wide host range and association with various diseases, FWSEC0542 exemplifies the complexities of microbial interactions in health and disease, highlighting the need for ongoing surveillance and research in microbiological ecology and public health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
Strainstrain FWSEC0542

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli strain FWSEC0542
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Bos taurus
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Escherichia coli strain FWSEC0542 plasmid unnamed10

Gene Summary

Adenine Count

1428529 bp

Thymine Count

1431449 bp

Guanine Count

1427846 bp

Cytosine Count

1432144 bp

Genome Length

5743659 bp

Protein-coding Genes

5479 genes

Non-Coding Genes

336 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
porphobilinogen synthaseC9309_04420Not AvailablePositive920708 - 92168235626.8
taurine dioxygenaseC9309_04425Not AvailableNegative921788 - 92263932381.2
taurine abc transporter permease taucC9309_04430Not AvailableNegative922636 - 92346329569.5
taurine abc transporter atp-binding subunitC9309_04435Not AvailableNegative923460 - 92422728304.6
taurine abc transporter substrate-binding proteinC9309_04440Not AvailableNegative924240 - 92520234239.8
pig-l family deacetylaseC9309_04445Not AvailablePositive925818 - 92648925025.2
glycosyltransferase family 2 proteinC9309_04450Not AvailablePositive926499 - 92769544725.0
acetyltransferaseC9309_04455Not AvailablePositive927673 - 92825420688.2
yaio family outer membrane beta-barrel proteinC9309_04460Not AvailablePositive928256 - 92902929037.8
transcriptional regulatorC9309_04465Not AvailablePositive929215 - 92949010336.4

Displaying genes 1131 – 1140 of 5814 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

Health ConditionRelationReference
Gi diseaseCausesPMC11149725
UtisCausesPMC11434687
Colorectal cancerCausesPMC12198655
Pyogenic liver abscessesCausesPMC12392612
UtiCausesPMC13014981
ColibacillosisCausesPMC13255289
Enteric infectionsCausesPMC13255289
Foodborne infectionsCausesPMC13255289
Clinical mastitisCausesPMC13293316
DiarrheaCausesPMC3035056

Displaying health effects 1 – 10 of 103 in total