Escherichia coli strain FWSEC0394

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli strain FWSEC0394 is a Gram-negative, rod-shaped bacterium that exhibits mobility due to the presence of flagella. This strain is classified as a facultative anaerobe, allowing it to thrive in both aerobic and anaerobic environments. The optimal growth temperature for FWSEC0394 is 37°C, placing it within the mesophilic temperature range. It is characterized by a cell arrangement of pairs and singles, and it possesses a single replicon and a double membrane structure. FWSEC0394 is primarily host-associated, with a diverse range of hosts including Homo sapiens, Gallus gallus, Bos taurus, and various other vertebrates and invertebrates. This indicates a broad ecological niche, allowing it to survive in multiple environments, from livestock to human hosts. Health effects associated with this strain are significant, as it is linked to various diseases, including urinary tract infections (UTIs), gastrointestinal infections, neonatal meningitis, and even severe conditions such as hemolytic uremic syndrome (HUS). The strain's pathogenicity primarily affects humans, but it also poses risks to other animals, highlighting its potential impact on both public health and veterinary medicine. The extensive range of health effects and host associations underscores the ecological importance of FWSEC0394, suggesting that it plays a complex role in both environmental and clinical settings. Understanding its behavior and pathogenicity can provide insights into managing infections and preventing disease spread among various species.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
Strainstrain FWSEC0394

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli strain FWSEC0394
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Bos taurus
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Escherichia coli strain FWSEC0394 plasmid unnamed3

Gene Summary

Adenine Count

1307856 bp

Thymine Count

1305726 bp

Guanine Count

1305776 bp

Cytosine Count

1334227 bp

Genome Length

5261935 bp

Protein-coding Genes

4823 genes

Non-Coding Genes

324 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
benzoate transporter beneC9169_19715Not AvailableNegative4143082 - 414429341940.6
xre family transcriptional regulatorC9169_19720Not AvailablePositive4144346 - 414488219754.5
u32 family peptidaseC9169_19725Not AvailablePositive4144955 - 414691672705.9
duf2554 family proteinC9169_19730Not AvailableNegative4147008 - 41472388709.32
mrna interferase hicaC9169_19735Not AvailablePositive4147460 - 41476366782.3
antitoxin hicbC9169_19740Not AvailablePositive4147682 - 414809815247.5
plp-dependent aminotransferase family proteinC9169_19745Not AvailablePositive4148177 - 414958352808.9
extracellular solute-binding proteinC9169_19750Not AvailablePositive4149828 - 415097342392.4
abc transporter atp-binding proteinC9169_19755Not AvailablePositive4150991 - 415200436989.8
abc transporter permeaseC9169_19760Not AvailablePositive4152005 - 415294634397.2

Displaying genes 4121 – 4130 of 5151 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

Health ConditionRelationReference
Gi diseaseCausesPMC11149725
UtisCausesPMC11434687
Colorectal cancerCausesPMC12198655
Pyogenic liver abscessesCausesPMC12392612
UtiCausesPMC13014981
ColibacillosisCausesPMC13255289
Enteric infectionsCausesPMC13255289
Foodborne infectionsCausesPMC13255289
Clinical mastitisCausesPMC13293316
DiarrheaCausesPMC3035056

Displaying health effects 1 – 10 of 103 in total