Escherichia coli strain FWSEC0390

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli strain FWSEC0390 is a Gram-negative, rod-shaped bacterium that exhibits mobility through the presence of flagella. It is classified as a facultative anaerobe, capable of thriving in both aerobic and anaerobic environments, with an optimal growth temperature of 37°C, placing it within the mesophilic range. This strain exhibits a cell arrangement of pairs and singles, indicative of its growth patterns in various environments. FWSEC0390 is primarily host-associated, with a diverse range of hosts including Homo sapiens, various livestock species (e.g., Bos taurus, Sus scrofa), and numerous other vertebrates and invertebrates. This broad host range suggests a significant ecological versatility, enabling the strain to inhabit different biological niches. The strain is known to be pathogenic to humans, associated with a variety of health effects including urinary tract infections (UTIs), gastrointestinal infections, neonatal meningitis, and severe conditions such as hemolytic uremic syndrome (HUS). Additionally, it is implicated in foodborne illnesses, indicating its potential role in public health concerns. In terms of biotic relationships, FWSEC0390 is classified as free-living, which may facilitate its transmission and persistence in the environment. The ability to cause various infections underscores the ecological impact of this strain, particularly in relation to human and animal health. The strain's pathogenic capabilities highlight the importance of monitoring E. coli variants in both clinical settings and agricultural contexts to mitigate associated health risks.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
Strainstrain FWSEC0390

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli strain FWSEC0390
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Bos taurus
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Escherichia coli strain FWSEC0390 plasmid unnamed3

Gene Summary

Adenine Count

1300810 bp

Thymine Count

1293561 bp

Guanine Count

1313857 bp

Cytosine Count

1330395 bp

Genome Length

5250183 bp

Protein-coding Genes

4835 genes

Non-Coding Genes

346 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
lysine-sensitive aspartokinase 3C9166_09545Not AvailablePositive2005255 - 200660448566.6
zeta toxinC9166_09550Not AvailablePositive2006749 - 200767534529.5
nucleotidyltransferase domain-containing proteinC9166_09555Not AvailableNegative2007711 - 200850230555.7
slipin family proteinC9166_09560Not AvailableNegative2008508 - 200963542372.5
duf3811 domain-containing proteinC9166_09565Not AvailablePositive2010164 - 201043610491.6
23s rrna pseudouridine(2604) synthase rlufC9166_09570Not AvailableNegative2010437 - 201130932464.5
dipeptidase pepeC9166_09575Not AvailablePositive2011521 - 201221024571.7
na/pi cotransporter family proteinC9166_09580Not AvailableNegative2012301 - 201393259440.7
methionine synthaseC9166_09585Not AvailableNegative2014152 - 2017835136004.0
glyoxylate bypass operon transcriptional repressor iclrC9166_09590Not AvailablePositive2018035 - 201885929672.0

Displaying genes 2171 – 2180 of 5186 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

Health ConditionRelationReference
Gi diseaseCausesPMC11149725
UtisCausesPMC11434687
Colorectal cancerCausesPMC12198655
Pyogenic liver abscessesCausesPMC12392612
UtiCausesPMC13014981
ColibacillosisCausesPMC13255289
Enteric infectionsCausesPMC13255289
Foodborne infectionsCausesPMC13255289
Clinical mastitisCausesPMC13293316
DiarrheaCausesPMC3035056

Displaying health effects 1 – 10 of 103 in total