Escherichia coli strain FWSEC0093

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli strain FWSEC0093 is a Gram-negative, rod-shaped bacterium that is classified as a facultative anaerobe, allowing it to thrive in both aerobic and anaerobic environments. This strain is capable of mobility due to the presence of flagella and typically exists in pairs or as single cells. Optimal growth occurs at 37°C, placing it within the mesophilic temperature range. FWSEC0093 is associated with a wide array of hosts, including Homo sapiens (humans), Gallus gallus (chickens), Bos taurus (cattle), and various other vertebrates and invertebrates. This diverse host range indicates its adaptability and potential ecological significance in different environments. The bacterium is free-living, suggesting it can survive independently in various habitats, including those associated with its hosts. The strain is notable for its pathogenicity in humans, being linked to numerous health complications such as urinary tract infections (UTIs), gastrointestinal infections, neonatal meningitis, and various other serious conditions like septicemia and hemolytic uremic syndrome (HUS). These health effects underscore the strain’s potential impact on public health and animal welfare. Given its ability to infect multiple hosts and its association with significant health effects, E. coli FWSEC0093 serves as a reminder of the complexities within microbial ecosystems and the importance of monitoring pathogenic strains in both human and veterinary contexts. Understanding its interactions with diverse hosts can provide insights into disease prevention and management strategies in clinical and agricultural settings.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
Strainstrain FWSEC0093

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli strain FWSEC0093
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Bos taurus
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Escherichia coli strain FWSEC0093 plasmid unnamed3

Gene Summary

Adenine Count

1321930 bp

Thymine Count

1327627 bp

Guanine Count

1355880 bp

Cytosine Count

1359524 bp

Genome Length

5376731 bp

Protein-coding Genes

4875 genes

Non-Coding Genes

359 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
redox-regulated atpase ychfC9Z43_22005Not AvailablePositive4469026 - 447011739683.6
type iv secretion protein rhsC9Z43_22010Not AvailableNegative4470256 - 44703342564.06
type vi secretion system tip protein vgrgC9Z43_22015Not AvailableNegative4470401 - 447250978740.9
hcp family type vi secretion system effectorC9Z43_22020Not AvailableNegative4472719 - 447323719256.8
type vi secretion system contractile sheath small subunitC9Z43_22025Not AvailablePositive4473934 - 447443418005.4
hypothetical proteinC9Z43_22030Not AvailablePositive4474469 - 44746757628.02
type vi secretion system contractile sheath large subunitC9Z43_22035Not AvailablePositive4474744 - 447621955695.0
type vi secretion system baseplate subunit tsseC9Z43_22040Not AvailablePositive4476226 - 447663915494.0
type vi secretion system baseplate subunit tssfC9Z43_22045Not AvailablePositive4476643 - 447849371143.9
type vi secretion system baseplate subunit tssgC9Z43_22050Not AvailablePositive4478457 - 447953940248.1

Displaying genes 4421 – 4430 of 5237 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

Health ConditionRelationReference
Gi diseaseCausesPMC11149725
UtisCausesPMC11434687
Colorectal cancerCausesPMC12198655
Pyogenic liver abscessesCausesPMC12392612
UtiCausesPMC13014981
ColibacillosisCausesPMC13255289
Enteric infectionsCausesPMC13255289
Foodborne infectionsCausesPMC13255289
Clinical mastitisCausesPMC13293316
DiarrheaCausesPMC3035056

Displaying health effects 1 – 10 of 103 in total