Escherichia coli strain FWSEC0089

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli strain FWSEC0089 is a Gram-negative, rod-shaped bacterium that is a facultative anaerobe, thriving optimally at 37°C and exhibiting mesophilic characteristics. This strain has a single replicon and is associated with two membranes. It demonstrates mobility, facilitated by the presence of flagella, and is typically found in pairs or singles. FWSEC0089 is predominantly host-associated, with a wide array of potential hosts, including Homo sapiens (humans), Gallus gallus (chickens), Bos taurus (cattle), various mammals, and even some plants such as Solanum lycopersicum (tomato) and Brassica oleracea var. italica (broccoli). This diverse host range indicates its adaptability and potential for varied ecological interactions. The strain is known for its pathogenicity in humans, being associated with multiple health issues, including urinary tract infections (UTIs), gastrointestinal infections, and severe conditions such as neonatal meningitis, septicemia, and hemolytic uremic syndrome (HUS). The presence of FWSEC0089 in various hosts suggests a complex biotic relationship, where it can be free-living or pathogenic, depending on the context. The ecological insight gained from the traits of E. coli FWSEC0089 highlights its role in both environmental and clinical settings. Its capacity to cause significant health effects in a variety of hosts underscores the importance of monitoring and understanding such strains, particularly in relation to zoonotic transmission and food safety. This strain exemplifies the intricate connections between microbial pathogens, their environments, and their hosts.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
Strainstrain FWSEC0089

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli strain FWSEC0089
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Bos taurus
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Escherichia coli strain FWSEC0089 plasmid unnamed5

Gene Summary

Adenine Count

1264594 bp

Thymine Count

1269300 bp

Guanine Count

1281235 bp

Cytosine Count

1297172 bp

Genome Length

5122166 bp

Protein-coding Genes

4648 genes

Non-Coding Genes

331 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
oligopeptide transport atp-binding protein oppfC9Z39_16115Not AvailableNegative3311039 - 331204337183.8
abc transporter atp-binding proteinC9Z39_16120Not AvailableNegative3312040 - 331305337148.7
peptide abc transporter permeaseC9Z39_16125Not AvailableNegative3313065 - 331397333023.9
peptide abc transporter permeaseC9Z39_16130Not AvailableNegative3313988 - 331490833445.3
oligopeptide abc transporter substrate-binding protein oppaC9Z39_16135Not AvailableNegative3314994 - 331662560979.1
naat family transporter ycheC9Z39_16140Not AvailableNegative3317363 - 331801023522.7
bifunctional acetaldehyde-coa/alcohol dehydrogenaseC9Z39_16145Not AvailablePositive3318487 - 332116296132.5
thymidine kinaseC9Z39_16155Not AvailableNegative3322464 - 332308123457.9
dna-binding protein h-nsC9Z39_16160Not AvailablePositive3323686 - 332409915540.5
utp--glucose-1-phosphate uridylyltransferaseC9Z39_16165Not AvailableNegative3324243 - 332515132944.2

Displaying genes 3361 – 3370 of 5002 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

Health ConditionRelationReference
Gi diseaseCausesPMC11149725
UtisCausesPMC11434687
Colorectal cancerCausesPMC12198655
Pyogenic liver abscessesCausesPMC12392612
UtiCausesPMC13014981
ColibacillosisCausesPMC13255289
Enteric infectionsCausesPMC13255289
Foodborne infectionsCausesPMC13255289
Clinical mastitisCausesPMC13293316
DiarrheaCausesPMC3035056

Displaying health effects 1 – 10 of 103 in total