Escherichia coli strain FWSEC0087

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli strain FWSEC0087 is a Gram-negative, rod-shaped bacterium that is facultatively anaerobic and exhibits mobility due to the presence of flagella. This strain is notably associated with a diverse range of hosts, including Homo sapiens, Gallus gallus, Bos taurus, and various other mammals, birds, and even plants like Solanum lycopersicum and Brassica oleracea var. italica. It thrives optimally at 37°C, categorizing it as mesophilic in nature. FWSEC0087 is recognized for its pathogenicity in humans, being linked to numerous health effects such as urinary tract infections (UTIs), gastrointestinal infections, and severe conditions like neonatal meningitis and hemolytic uremic syndrome (HUS). The strain's ability to cause a wide array of diseases, including peritonitis, diarrhea, and sepsis, underscores its clinical significance and potential impact on public health. The bacterium's biotic relationship is classified as free-living, which allows it to survive in various environments associated with its numerous hosts. This adaptability not only facilitates its transmission but may also contribute to its pathogenic potential. Overall, E. coli strain FWSEC0087 exemplifies the dual nature of certain microbial species, acting as both commensals and pathogens, thus highlighting the complexity of host-microbe interactions within ecological systems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
Strainstrain FWSEC0087

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli strain FWSEC0087
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Bos taurus
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Escherichia coli strain FWSEC0087 plasmid unnamed4

Gene Summary

Adenine Count

1364238 bp

Thymine Count

1366477 bp

Guanine Count

1376973 bp

Cytosine Count

1362009 bp

Genome Length

5487031 bp

Protein-coding Genes

5143 genes

Non-Coding Genes

265 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
mechanosensitive ion channel family proteinC9Z37_11915Not AvailablePositive2505162 - 250640946619.5
aromatic amino acid transporter aropC9Z37_11920Not AvailableNegative2506477 - 250785350648.3
cu(+)/ag(+) efflux rnd transporter permease subunit cusaC9Z37_11925Not AvailableNegative2507955 - 2511098114714.0
cu(+)/ag(+) efflux rnd transporter periplasmic adaptor subunit cusbC9Z37_11930Not AvailableNegative2511110 - 251233344346.4
cu(+)/ag(+) efflux rnd transporter periplasmic metallochaperone cusfC9Z37_11935Not AvailableNegative2512349 - 251268112281.9
efflux transporter outer membrane subunitC9Z37_11940Not AvailableNegative2512705 - 251408750714.9
copper response regulator transcription factor cusrC9Z37_11945Not AvailablePositive2514244 - 251492725428.2
cu(+)/ag(+) sensor histidine kinase cussC9Z37_11950Not AvailablePositive2514917 - 251636554135.7
type vi secretion system tip protein vgrgC9Z37_11955Not AvailablePositive2517102 - 251900371416.0
duf1795 domain-containing proteinC9Z37_11960Not AvailablePositive2519031 - 251949217319.4

Displaying genes 2551 – 2560 of 5412 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

Health ConditionRelationReference
Gi diseaseCausesPMC11149725
UtisCausesPMC11434687
Colorectal cancerCausesPMC12198655
Pyogenic liver abscessesCausesPMC12392612
UtiCausesPMC13014981
ColibacillosisCausesPMC13255289
Enteric infectionsCausesPMC13255289
Foodborne infectionsCausesPMC13255289
Clinical mastitisCausesPMC13293316
DiarrheaCausesPMC3035056

Displaying health effects 1 – 10 of 103 in total