Escherichia coli strain FWSEC0039

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli strain FWSEC0039 is a Gram-negative, rod-shaped bacterium that exhibits facultative anaerobic metabolism. It is motile, possessing flagella that enable it to move, and typically exists in pairs or singles. This strain thrives optimally at 37°C, indicating its mesophilic nature, and has a single replicon and two membranes. FWSEC0039 is host-associated, demonstrating a wide range of biotic relationships with various hosts, including Homo sapiens (humans), Gallus gallus (domestic chickens), Bos taurus (cattle), and many others across different taxa like Metazoa, Mollusca, and various mammals. This broad host range suggests its ability to adapt to different biological environments, which may enhance its survival and propagation. The strain is known to be pathogenic in humans, associated with numerous health effects such as urinary tract infections (UTIs), gastrointestinal infections, and severe conditions like hemolytic uremic syndrome (HUS) and neonatal meningitis. It is implicated in both foodborne infections and nosocomial infections, highlighting its relevance in public health and clinical settings. The ecological insight from these traits indicates that E. coli strain FWSEC0039 plays a significant role in both the environment and within host organisms. Given its pathogenic potential and diverse host associations, it underscores the importance of monitoring and understanding such strains to mitigate health risks and manage infections effectively.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
Strainstrain FWSEC0039

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli strain FWSEC0039
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Bos taurus
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Escherichia coli strain FWSEC0039 plasmid unnamed4

Gene Summary

Adenine Count

1272867 bp

Thymine Count

1269683 bp

Guanine Count

1302839 bp

Cytosine Count

1286422 bp

Genome Length

5141161 bp

Protein-coding Genes

4737 genes

Non-Coding Genes

293 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
serine o-acetyltransferaseC9Y90_15695Not AvailablePositive3298645 - 329946629318.4
trna (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-o)- methyltransferase trmlC9Y90_15700Not AvailableNegative3299528 - 330000117738.3
alpha-hydroxy-acid oxidizing proteinC9Y90_15705Not AvailableNegative3300156 - 330134642744.7
transcriptional regulator lldrC9Y90_15710Not AvailableNegative3301343 - 330211929198.0
l-lactate permeaseC9Y90_15715Not AvailableNegative3302119 - 330377459189.5
adhesinC9Y90_15720Not AvailableNegative3304142 - 3308737153966.0
duf3251 domain-containing proteinC9Y90_15725Not AvailableNegative3308781 - 330936221726.1
is1 encoded proteinC9Y90_15730Not AvailablePositive3309829 - 33099213385.99
yibl family ribosome-associated proteinC9Y90_15735Not AvailableNegative3310007 - 331036913696.8
hypothetical proteinC9Y90_15740Not AvailablePositive3310654 - 33108637995.76

Displaying genes 3331 – 3340 of 5039 in total

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

Health ConditionRelationReference
Gi diseaseCausesPMC11149725
UtisCausesPMC11434687
Colorectal cancerCausesPMC12198655
Pyogenic liver abscessesCausesPMC12392612
UtiCausesPMC13014981
ColibacillosisCausesPMC13255289
Enteric infectionsCausesPMC13255289
Foodborne infectionsCausesPMC13255289
Clinical mastitisCausesPMC13293316
DiarrheaCausesPMC3035056

Displaying health effects 1 – 10 of 103 in total