Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain FWSEC0039 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1272867 bp
Thymine Count
1269683 bp
Guanine Count
1302839 bp
Cytosine Count
1286422 bp
Genome Length
5141161 bp
Protein-coding Genes
4737 genes
Non-Coding Genes
293 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nadph-dependent 7-cyano-7-deazaguanine reductase quef | C9Y90_12945 | Not Available | Negative | 2722346 - 2723194 | 32589.3 |
| protein syd | C9Y90_12950 | Not Available | Positive | 2723262 - 2723807 | 20709.6 |
| yqcc family protein | C9Y90_12955 | Not Available | Positive | 2724429 - 2724758 | 12787.2 |
| trna pseudouridine(65) synthase truc | C9Y90_12960 | Not Available | Positive | 2724758 - 2725540 | 29667.5 |
| flavodoxin | C9Y90_12965 | Not Available | Positive | 2725558 - 2726007 | 16275.1 |
| mfs transporter | C9Y90_12970 | Not Available | Positive | 2726442 - 2727794 | 49172.0 |
| glucarate dehydratase-related protein | C9Y90_12975 | Not Available | Positive | 2727796 - 2729136 | 48940.5 |
| glucarate dehydratase | C9Y90_12980 | Not Available | Positive | 2729157 - 2730497 | 49158.9 |
| two-component sensor histidine kinase bara | C9Y90_12985 | Not Available | Negative | 2730729 - 2733485 | 102446.0 |
| 23s rrna (uracil(1939)-c(5))-methyltransferase rlmd | C9Y90_12990 | Not Available | Positive | 2733542 - 2734843 | 48076.1 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





