Halocatena pleomorpha strain SPP-AMP-1

Kingdom

Methanobacteriati

Phylum

Methanobacteriota

Class

Halobacteria

Order

Halobacteriales

Family

Natronomonadaceae

Genus

Halocatena

Description

Halocatena pleomorpha strain SPP-AMP-1 is characterized by a single replicon, indicating a streamlined genomic structure. This trait can suggest certain advantages in terms of genetic stability and replication efficiency. The strain is cataloged under the accession number RRCH00000000.1, which serves as a reference for researchers seeking to access its genomic data for further studies. Given its classification within the genus Halocatena, this strain is expected to thrive in hypersaline environments, a characteristic common to members of this genus. The ability to adapt to extreme saline conditions can provide insights into the ecological roles of Halocatena pleomorpha in such ecosystems, where it may contribute to nutrient cycling and the maintenance of microbial diversity. In summary, Halocatena pleomorpha strain SPP-AMP-1, with its unique genomic structure and adaptation to high salinity, exemplifies the resilience of microorganisms in harsh environments, potentially influencing the ecological dynamics of microbial communities in saline habitats.

Taxonomy

KingdomMethanobacteriati
PhylumMethanobacteriota
ClassHalobacteria
OrderHalobacteriales
FamilyNatronomonadaceae
GenusHalocatena
SpeciesHalocatena pleomorpha
Strainstrain SPP-AMP-1

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Halocatena pleomorpha strain SPP-AMP-1

Gene Summary

Adenine Count

785026 bp

Thymine Count

782723 bp

Guanine Count

1043952 bp

Cytosine Count

1043648 bp

Genome Length

3658589 bp

Protein-coding Genes

3340 genes

Non-Coding Genes

48 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
carbohydrate abc transporter substrate-binding proteinEIK79_02515Not AvailableNegative498953 - 50026347582.9
mandelate racemase/muconate lactonizing enzyme family proteinEIK79_02520Not AvailableNegative500755 - 50198745749.5
iclr family transcriptional regulatorEIK79_02525Not AvailablePositive502352 - 50310728079.3
halocyanin domain-containing proteinEIK79_02530Not AvailableNegative503264 - 50388721521.7
lrp/asnc family transcriptional regulatorEIK79_02535Not AvailableNegative504353 - 50487120391.9
capa family proteinEIK79_02540Not AvailableNegative505105 - 50611237353.4
ybhb/ybcl family raf kinase inhibitor-like proteinEIK79_02545Not AvailablePositive506261 - 50671616483.1
tigr00341 family proteinEIK79_02550Not AvailablePositive506785 - 50812547835.7
transcription initiation factor iibEIK79_02555Not AvailablePositive508293 - 50925835738.0
hypothetical proteinEIK79_02560Not AvailableNegative509582 - 51044530791.6

Displaying genes 461 – 470 of 3388 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.