Halocatena pleomorpha strain SPP-AMP-1

Kingdom

Methanobacteriati

Phylum

Methanobacteriota

Class

Halobacteria

Order

Halobacteriales

Family

Natronomonadaceae

Genus

Halocatena

Description

Halocatena pleomorpha strain SPP-AMP-1 is characterized by a single replicon, indicating a streamlined genomic structure. This trait can suggest certain advantages in terms of genetic stability and replication efficiency. The strain is cataloged under the accession number RRCH00000000.1, which serves as a reference for researchers seeking to access its genomic data for further studies. Given its classification within the genus Halocatena, this strain is expected to thrive in hypersaline environments, a characteristic common to members of this genus. The ability to adapt to extreme saline conditions can provide insights into the ecological roles of Halocatena pleomorpha in such ecosystems, where it may contribute to nutrient cycling and the maintenance of microbial diversity. In summary, Halocatena pleomorpha strain SPP-AMP-1, with its unique genomic structure and adaptation to high salinity, exemplifies the resilience of microorganisms in harsh environments, potentially influencing the ecological dynamics of microbial communities in saline habitats.

Taxonomy

KingdomMethanobacteriati
PhylumMethanobacteriota
ClassHalobacteria
OrderHalobacteriales
FamilyNatronomonadaceae
GenusHalocatena
SpeciesHalocatena pleomorpha
Strainstrain SPP-AMP-1

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Halocatena pleomorpha strain SPP-AMP-1

Gene Summary

Adenine Count

785026 bp

Thymine Count

782723 bp

Guanine Count

1043952 bp

Cytosine Count

1043648 bp

Genome Length

3658589 bp

Protein-coding Genes

3340 genes

Non-Coding Genes

48 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
crispr-associated protein cas4EIK79_17640Not AvailableNegative3633888 - 363444521684.0
crispr-associated endoribonuclease cas6EIK79_17645Not AvailablePositive3635111 - 363593230659.9
hypothetical proteinEIK79_17650Not AvailablePositive3635932 - 363813981772.2
type i-b crispr-associated protein cas7/csh2EIK79_17655Not AvailablePositive3638145 - 363922739921.0
type i-b crispr-associated protein cas5EIK79_17660Not AvailablePositive3639231 - 364007630372.6
crispr-associated endonuclease cas3''EIK79_17665Not AvailablePositive3640073 - 3642955105648.0
hypothetical proteinEIK79_17670Not AvailablePositive3644256 - 364453410308.8
6,7-dimethyl-8-ribityllumazine synthaseEIK79_17675Not AvailablePositive3644790 - 36449736621.83
s9 family peptidaseEIK79_17680Not AvailablePositive3644974 - 364540816158.8
crispr-associated endonuclease cas2EIK79_17695Not AvailablePositive3646265 - 36463985223.4

Displaying genes 3371 – 3380 of 3388 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.