Amphritea opalescens strain ANRC-JH13

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Oceanospirillales

Family

Oceanospirillaceae

Genus

Amphritea

Description

Amphritea opalescens strain ANRC-JH13 is characterized as a Gram-negative, rod-shaped bacterium. It possesses a single replicon, which is significant for its genetic stability and potential for efficient replication. The genomic information for this strain is accessible under the accession number RQXW00000000.1, providing a resource for researchers interested in its genetic makeup and potential applications. As a member of the Amphritea genus, this strain may exhibit unique metabolic capabilities and ecological roles, particularly in marine environments where many members of this genus are found. The Gram-negative classification suggests that Amphritea opalescens strain ANRC-JH13 has a complex cell wall structure, which can influence its interactions with other microorganisms and its resilience to environmental stresses. Understanding the characteristics of Amphritea opalescens strain ANRC-JH13 can provide insights into its ecological niche and potential biotechnological applications. The strain's single replicon may allow for easier genetic manipulation, which could be beneficial in exploring its metabolic pathways or in bioremediation efforts, especially in marine contexts. Additionally, the study of its ecological interactions may reveal its role in nutrient cycling or its impact on other microbial communities in its habitat.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderOceanospirillales
FamilyOceanospirillaceae
GenusAmphritea
SpeciesAmphritea opalescens
Strainstrain ANRC-JH13

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Amphritea opalescens strain ANRC-JH13

Gene Summary

Adenine Count

1045600 bp

Thymine Count

1078682 bp

Guanine Count

1024688 bp

Cytosine Count

975932 bp

Genome Length

4127332 bp

Protein-coding Genes

3581 genes

Non-Coding Genes

79 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
d-alanine--d-alanine ligaseEH243_13140Not AvailableNegative2949147 - 295009134010.5
udp-n-acetylmuramate--l-alanine ligaseEH243_13145Not AvailableNegative2950091 - 295153652319.7
undecaprenyldiphospho-muramoylpentapeptide beta-n-acetylglucosaminyltransferaseEH243_13150Not AvailableNegative2951533 - 295263038512.3
putative lipid ii flippase ftswEH243_13155Not AvailableNegative2952623 - 295381643229.5
udp-n-acetylmuramoyl-l-alanine--d-glutamate ligaseEH243_13160Not AvailableNegative2953843 - 295519546932.6
phospho-n-acetylmuramoyl-pentapeptide- transferaseEH243_13165Not AvailableNegative2955206 - 295628839248.2
udp-n-acetylmuramoyl-tripeptide--d-alanyl-d- alanine ligaseEH243_13170Not AvailableNegative2956288 - 295767648377.5
udp-n-acetylmuramoyl-l-alanyl-d-glutamate--2, 6-diaminopimelate ligaseEH243_13175Not AvailableNegative2957673 - 295915452318.4
penicillin-binding protein 2EH243_13180Not AvailableNegative2959151 - 296086662260.7
cell division protein ftslEH243_13185Not AvailableNegative2960856 - 296120613267.4

Displaying genes 2611 – 2620 of 3660 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.