Amphritea opalescens strain ANRC-JH13

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Oceanospirillales

Family

Oceanospirillaceae

Genus

Amphritea

Description

Amphritea opalescens strain ANRC-JH13 is characterized as a Gram-negative, rod-shaped bacterium. It possesses a single replicon, which is significant for its genetic stability and potential for efficient replication. The genomic information for this strain is accessible under the accession number RQXW00000000.1, providing a resource for researchers interested in its genetic makeup and potential applications. As a member of the Amphritea genus, this strain may exhibit unique metabolic capabilities and ecological roles, particularly in marine environments where many members of this genus are found. The Gram-negative classification suggests that Amphritea opalescens strain ANRC-JH13 has a complex cell wall structure, which can influence its interactions with other microorganisms and its resilience to environmental stresses. Understanding the characteristics of Amphritea opalescens strain ANRC-JH13 can provide insights into its ecological niche and potential biotechnological applications. The strain's single replicon may allow for easier genetic manipulation, which could be beneficial in exploring its metabolic pathways or in bioremediation efforts, especially in marine contexts. Additionally, the study of its ecological interactions may reveal its role in nutrient cycling or its impact on other microbial communities in its habitat.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderOceanospirillales
FamilyOceanospirillaceae
GenusAmphritea
SpeciesAmphritea opalescens
Strainstrain ANRC-JH13

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Amphritea opalescens strain ANRC-JH13

Gene Summary

Adenine Count

1045600 bp

Thymine Count

1078682 bp

Guanine Count

1024688 bp

Cytosine Count

975932 bp

Genome Length

4127332 bp

Protein-coding Genes

3581 genes

Non-Coding Genes

79 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
low molecular weight phosphotyrosine protein phosphataseEH243_10675Not AvailablePositive2386716 - 238718917262.7
udp-n-acetylmuramate dehydrogenaseEH243_10680Not AvailablePositive2387186 - 238821137375.6
ribonuclease eEH243_10685Not AvailableNegative2388511 - 2391681116995.0
23s rrna pseudouridine(955/2504/2580) synthase rlucEH243_10690Not AvailablePositive2392194 - 239317436844.1
hypothetical proteinEH243_10695Not AvailablePositive2393184 - 239429042456.3
hth-type transcriptional regulator cysbEH243_10700Not AvailablePositive2394459 - 239543336452.9
rna pseudouridine synthaseEH243_10705Not AvailablePositive2395531 - 239647536306.6
llm class flavin-dependent oxidoreductaseEH243_10710Not AvailableNegative2396542 - 239756737412.1
heme-binding proteinEH243_10715Not AvailableNegative2397557 - 239797614598.4
sigma-54-dependent fis family transcriptional regulatorEH243_10720Not AvailableNegative2397976 - 239970064150.6

Displaying genes 2121 – 2130 of 3660 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.