Paenibacillus xylanexedens strain EDO6

Kingdom

Bacillati

Phylum

Bacillota

Class

Bacilli

Order

Caryophanales

Family

Paenibacillaceae

Genus

Paenibacillus

Description

Paenibacillus xylanexedens strain EDO6 is characterized by a single replicon, which indicates a streamlined genomic structure that may facilitate efficient replication and gene expression. This trait is significant as it can influence the organism's adaptability and metabolic capabilities. The strain is cataloged under the accession number RPHH00000000.1, which provides a reference for researchers seeking detailed genetic information and further studies related to this specific bacterium. The accession number serves as a gateway for exploring the genomic data, potentially aiding in the understanding of the strain's functional attributes and ecological roles. Biologically, Paenibacillus species are known for their diverse metabolic pathways, including the ability to degrade complex carbohydrates. This trait suggests that strain EDO6 may play a role in the breakdown of plant materials, contributing to nutrient cycling in its environment. Such capabilities are especially relevant in ecosystems where organic matter decomposition is vital for soil health and fertility. In summary, the single replicon of Paenibacillus xylanexedens strain EDO6, along with its genetic reference, highlights its potential significance in microbial ecology, particularly in the degradation of xylan and other polysaccharides in various habitats.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassBacilli
OrderCaryophanales
FamilyPaenibacillaceae
GenusPaenibacillus
SpeciesPaenibacillus xylanexedens
Strainstrain EDO6

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Paenibacillus xylanexedens strain EDO6 NODE_77, whole genome

Gene Summary

Adenine Count

2016865 bp

Thymine Count

1987607 bp

Guanine Count

1711498 bp

Cytosine Count

1638683 bp

Genome Length

7356545 bp

Protein-coding Genes

6355 genes

Non-Coding Genes

315 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dihydrolipoamide dehydrogenaseEDO6_02294Not AvailableNegative2604916 - 260633149773.1
dihydrolipoamide acetyltransferase componentEDO6_02295Not AvailableNegative2606335 - 260765746689.4
pyruvate dehydrogenase e1 component beta subunitEDO6_02296Not AvailableNegative2607834 - 260881135444.9
pyruvate dehydrogenase e1 component alpha subunitEDO6_02297Not AvailableNegative2608913 - 260998039630.3
hypothetical proteinEDO6_02298Not AvailablePositive2610237 - 261097128172.4
low molecular weight protein tyrosine phosphataseEDO6_02299Not AvailableNegative2611138 - 261160817628.9
hypothetical proteinEDO6_02300Not AvailableNegative2611610 - 261225722880.5
thiamine pyrophosphokinaseEDO6_02301Not AvailablePositive2612494 - 261313523592.6
hypothetical proteinEDO6_02302Not AvailablePositive2613432 - 261393217698.3
hypothetical proteinEDO6_02303Not AvailableNegative2614043 - 261474726935.8

Displaying genes 2471 – 2480 of 6665 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.