Chitinophaga barathri strain YLT18

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Chitinophagia

Order

Chitinophagales

Family

Chitinophagaceae

Genus

Chitinophaga

Description

Chitinophaga barathri strain YLT18 is a Gram-negative, rod-shaped bacterium characterized by its single replicon. This strain is part of the Chitinophaga genus, which is known for its ability to degrade chitin, a key component of the exoskeletons of arthropods and the cell walls of fungi. The specific accession number for Chitinophaga barathri strain YLT18 is RMBX00000000.1, indicating the genomic data available for this strain. The Gram-negative classification suggests that Chitinophaga barathri strain YLT18 possesses a thin peptidoglycan layer surrounded by an outer membrane, which is typical of many bacteria in this group and can influence its interactions with the environment, including its susceptibility to antibiotics and its mechanisms of nutrient uptake. The ecological role of Chitinophaga barathri strain YLT18 is likely tied to its chitinolytic capabilities, which may contribute to nutrient cycling in various ecosystems, particularly in environments rich in chitinous materials. By breaking down chitin, this bacterium may facilitate the recycling of carbon and nitrogen, supporting the growth of other organisms and contributing to soil health. Such traits underscore the importance of Chitinophaga barathri strain YLT18 in microbial communities, particularly those involved in the decomposition of organic matter.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassChitinophagia
OrderChitinophagales
FamilyChitinophagaceae
GenusChitinophaga
SpeciesChitinophaga barathri
Strainstrain YLT18

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Chitinophaga barathri strain YLT18

Gene Summary

Adenine Count

1669398 bp

Thymine Count

1658131 bp

Guanine Count

1757671 bp

Cytosine Count

1776944 bp

Genome Length

6863467 bp

Protein-coding Genes

5487 genes

Non-Coding Genes

59 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ccmd family proteinEG028_22795Not AvailablePositive5585554 - 55858089661.05
glu/leu/phe/val dehydrogenaseEG028_22800Not AvailablePositive5585874 - 558731052866.0
type i restriction enzyme hsdr n-terminal domain-containing proteinEG028_22805Not AvailableNegative5587687 - 558816018078.9
amp nucleosidaseEG028_22810Not AvailablePositive5588225 - 558899528427.3
abc transporter atp-binding proteinEG028_22815Not AvailablePositive5588992 - 559075865628.2
trna preq1(34) s-adenosylmethionine ribosyltransferase-isomerase queaEG028_22820Not AvailablePositive5590777 - 559182639997.3
2-c-methyl-d-erythritol 4-phosphate cytidylyltransferaseEG028_22825Not AvailablePositive5591906 - 559258924854.0
hypothetical proteinEG028_22830Not AvailableNegative5592594 - 559291111969.3
gfo/idh/moca family oxidoreductaseEG028_22835Not AvailableNegative5593064 - 559404136259.3
pkd domain-containing proteinEG028_22840Not AvailablePositive5594137 - 559615873554.4

Displaying genes 4531 – 4540 of 5546 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.