Chitinophaga barathri strain YLT18

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Chitinophagia

Order

Chitinophagales

Family

Chitinophagaceae

Genus

Chitinophaga

Description

Chitinophaga barathri strain YLT18 is a Gram-negative, rod-shaped bacterium characterized by its single replicon. This strain is part of the Chitinophaga genus, which is known for its ability to degrade chitin, a key component of the exoskeletons of arthropods and the cell walls of fungi. The specific accession number for Chitinophaga barathri strain YLT18 is RMBX00000000.1, indicating the genomic data available for this strain. The Gram-negative classification suggests that Chitinophaga barathri strain YLT18 possesses a thin peptidoglycan layer surrounded by an outer membrane, which is typical of many bacteria in this group and can influence its interactions with the environment, including its susceptibility to antibiotics and its mechanisms of nutrient uptake. The ecological role of Chitinophaga barathri strain YLT18 is likely tied to its chitinolytic capabilities, which may contribute to nutrient cycling in various ecosystems, particularly in environments rich in chitinous materials. By breaking down chitin, this bacterium may facilitate the recycling of carbon and nitrogen, supporting the growth of other organisms and contributing to soil health. Such traits underscore the importance of Chitinophaga barathri strain YLT18 in microbial communities, particularly those involved in the decomposition of organic matter.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassChitinophagia
OrderChitinophagales
FamilyChitinophagaceae
GenusChitinophaga
SpeciesChitinophaga barathri
Strainstrain YLT18

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Chitinophaga barathri strain YLT18

Gene Summary

Adenine Count

1669398 bp

Thymine Count

1658131 bp

Guanine Count

1757671 bp

Cytosine Count

1776944 bp

Genome Length

6863467 bp

Protein-coding Genes

5487 genes

Non-Coding Genes

59 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hydrolaseEG028_18335Not AvailablePositive4532871 - 453403744809.4
mfs transporterEG028_18340Not AvailablePositive4534060 - 453523841822.3
gnat family n-acetyltransferaseEG028_18345Not AvailableNegative4535321 - 453583619606.4
sigma-70 family rna polymerase sigma factorEG028_18350Not AvailablePositive4535852 - 453666131152.9
fecr family proteinEG028_18355Not AvailablePositive4536806 - 453797542900.3
susc/raga family tonb-linked outer membrane proteinEG028_18360Not AvailablePositive4538138 - 4541488121568.0
ragb/susd family nutrient uptake outer membrane proteinEG028_18365Not AvailablePositive4541512 - 454295453016.6
hypothetical proteinEG028_18370Not AvailablePositive4542951 - 45431637655.39
carbohydrate-binding proteinEG028_18375Not AvailablePositive4543346 - 4547419147221.0
nipsnap family containing proteinEG028_18380Not AvailableNegative4547501 - 454828329424.2

Displaying genes 3651 – 3660 of 5546 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.