Chitinophaga barathri strain YLT18

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Chitinophagia

Order

Chitinophagales

Family

Chitinophagaceae

Genus

Chitinophaga

Description

Chitinophaga barathri strain YLT18 is a Gram-negative, rod-shaped bacterium characterized by its single replicon. This strain is part of the Chitinophaga genus, which is known for its ability to degrade chitin, a key component of the exoskeletons of arthropods and the cell walls of fungi. The specific accession number for Chitinophaga barathri strain YLT18 is RMBX00000000.1, indicating the genomic data available for this strain. The Gram-negative classification suggests that Chitinophaga barathri strain YLT18 possesses a thin peptidoglycan layer surrounded by an outer membrane, which is typical of many bacteria in this group and can influence its interactions with the environment, including its susceptibility to antibiotics and its mechanisms of nutrient uptake. The ecological role of Chitinophaga barathri strain YLT18 is likely tied to its chitinolytic capabilities, which may contribute to nutrient cycling in various ecosystems, particularly in environments rich in chitinous materials. By breaking down chitin, this bacterium may facilitate the recycling of carbon and nitrogen, supporting the growth of other organisms and contributing to soil health. Such traits underscore the importance of Chitinophaga barathri strain YLT18 in microbial communities, particularly those involved in the decomposition of organic matter.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassChitinophagia
OrderChitinophagales
FamilyChitinophagaceae
GenusChitinophaga
SpeciesChitinophaga barathri
Strainstrain YLT18

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Chitinophaga barathri strain YLT18

Gene Summary

Adenine Count

1669398 bp

Thymine Count

1658131 bp

Guanine Count

1757671 bp

Cytosine Count

1776944 bp

Genome Length

6863467 bp

Protein-coding Genes

5487 genes

Non-Coding Genes

59 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinEG028_12845Not AvailableNegative3190009 - 319067124607.1
duf1569 domain-containing proteinEG028_12850Not AvailableNegative3190683 - 319112617320.9
hypothetical proteinEG028_12855Not AvailableNegative3191136 - 319148312631.4
crp/fnr family transcriptional regulatorEG028_12860Not AvailableNegative3191564 - 319214222478.6
atp phosphoribosyltransferaseEG028_12865Not AvailablePositive3192654 - 319350831266.3
histidinol dehydrogenaseEG028_12870Not AvailablePositive3193520 - 319480045717.8
histidinol-phosphate transaminaseEG028_12875Not AvailablePositive3194805 - 319585739113.0
bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase hisbEG028_12880Not AvailablePositive3195934 - 319706742331.7
anthranilate synthase component i family proteinEG028_12885Not AvailablePositive3197295 - 319870453234.4
aminodeoxychorismate/anthranilate synthase component iiEG028_12890Not AvailablePositive3198706 - 319927521057.3

Displaying genes 2561 – 2570 of 5546 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.