Chitinophaga barathri strain YLT18

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Chitinophagia

Order

Chitinophagales

Family

Chitinophagaceae

Genus

Chitinophaga

Description

Chitinophaga barathri strain YLT18 is a Gram-negative, rod-shaped bacterium characterized by its single replicon. This strain is part of the Chitinophaga genus, which is known for its ability to degrade chitin, a key component of the exoskeletons of arthropods and the cell walls of fungi. The specific accession number for Chitinophaga barathri strain YLT18 is RMBX00000000.1, indicating the genomic data available for this strain. The Gram-negative classification suggests that Chitinophaga barathri strain YLT18 possesses a thin peptidoglycan layer surrounded by an outer membrane, which is typical of many bacteria in this group and can influence its interactions with the environment, including its susceptibility to antibiotics and its mechanisms of nutrient uptake. The ecological role of Chitinophaga barathri strain YLT18 is likely tied to its chitinolytic capabilities, which may contribute to nutrient cycling in various ecosystems, particularly in environments rich in chitinous materials. By breaking down chitin, this bacterium may facilitate the recycling of carbon and nitrogen, supporting the growth of other organisms and contributing to soil health. Such traits underscore the importance of Chitinophaga barathri strain YLT18 in microbial communities, particularly those involved in the decomposition of organic matter.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassChitinophagia
OrderChitinophagales
FamilyChitinophagaceae
GenusChitinophaga
SpeciesChitinophaga barathri
Strainstrain YLT18

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Chitinophaga barathri strain YLT18

Gene Summary

Adenine Count

1669398 bp

Thymine Count

1658131 bp

Guanine Count

1757671 bp

Cytosine Count

1776944 bp

Genome Length

6863467 bp

Protein-coding Genes

5487 genes

Non-Coding Genes

59 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
atp-binding proteinEG028_10425Not AvailablePositive2601116 - 260230645045.5
phytaseEG028_10430Not AvailableNegative2602368 - 260339337888.8
tonb-dependent receptorEG028_10435Not AvailableNegative2603409 - 2606201104241.0
hypothetical proteinEG028_10440Not AvailableNegative2606560 - 260814361381.8
arylsulfataseEG028_10445Not AvailableNegative2608319 - 260977652507.8
alpha-l-fucosidaseEG028_10450Not AvailableNegative2609875 - 261125152923.9
alpha-galactosidaseEG028_10455Not AvailableNegative2612106 - 261425380372.4
ragb/susd family nutrient uptake outer membrane proteinEG028_10460Not AvailableNegative2614384 - 261605161775.8
susc/raga family tonb-linked outer membrane proteinEG028_10465Not AvailableNegative2616063 - 2619509127378.0
duf4974 domain-containing proteinEG028_10470Not AvailableNegative2619694 - 262074940592.4

Displaying genes 2081 – 2090 of 5546 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.