Shewanella psychromarinicola strain R106

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Alteromonadales

Family

Shewanellaceae

Genus

Shewanella

Description

Shewanella psychromarinicola strain R106 is a notable bacterium characterized by the presence of flagella, which enables motility and potentially enhances its ecological adaptability in various environments. This strain possesses a single replicon, indicating a streamlined genomic organization that may facilitate efficient replication and gene expression. The genomic information for Shewanella psychromarinicola strain R106 is cataloged under the accession number RKKB00000000.1, providing a reference point for researchers interested in studying its genetic makeup and functional capabilities. The presence of a flagellum suggests that this bacterium can navigate its environment effectively, which may be crucial for survival in the often cold and nutrient-limited habitats it inhabits. Ecologically, Shewanella species are known for their versatility in electron transport and their ability to thrive in diverse conditions, including those found in marine and polar regions. The adaptation mechanisms exhibited by Shewanella psychromarinicola strain R106 may play an essential role in biogeochemical cycles, particularly in the degradation of organic matter and the reduction of metal ions, contributing to nutrient cycling in cold marine ecosystems. Understanding the specific traits and capabilities of this strain enhances our knowledge of microbial life in extreme environments and its ecological significance.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAlteromonadales
FamilyShewanellaceae
GenusShewanella
SpeciesShewanella psychromarinicola
Strainstrain R106

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Shewanella psychromarinicola strain R106 ctg_53, whole genome

Gene Summary

Adenine Count

1483097 bp

Thymine Count

1465334 bp

Guanine Count

1053799 bp

Cytosine Count

1092394 bp

Genome Length

5098660 bp

Protein-coding Genes

4203 genes

Non-Coding Genes

106 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hydrogenase formation protein hypdEGC77_12965Not AvailableNegative2948206 - 294933341202.7
hypc/hybg/hupf family hydrogenase formation chaperoneEGC77_12970Not AvailableNegative2949333 - 29495728936.79
hydrogenase accessory protein hypbEGC77_12975Not AvailableNegative2949575 - 295029426731.6
carbamoyltransferase hypfEGC77_12980Not AvailableNegative2950495 - 295286187710.4
nife hydrogenaseEGC77_12985Not AvailableNegative2952916 - 295487472962.3
hydrogenase maturation proteaseEGC77_12990Not AvailableNegative2954867 - 295542120138.4
ni/fe-hydrogenase, b-type cytochrome subunitEGC77_12995Not AvailableNegative2955437 - 295610525514.7
nickel-dependent hydrogenase large subunitEGC77_13000Not AvailableNegative2956137 - 295784062472.9
hydrogenaseEGC77_13005Not AvailableNegative2957843 - 295897941122.0
dmt family transporterEGC77_13010Not AvailableNegative2959492 - 296035231746.4

Displaying genes 2511 – 2520 of 4309 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.