Shewanella psychromarinicola strain R106

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Alteromonadales

Family

Shewanellaceae

Genus

Shewanella

Description

Shewanella psychromarinicola strain R106 is a notable bacterium characterized by the presence of flagella, which enables motility and potentially enhances its ecological adaptability in various environments. This strain possesses a single replicon, indicating a streamlined genomic organization that may facilitate efficient replication and gene expression. The genomic information for Shewanella psychromarinicola strain R106 is cataloged under the accession number RKKB00000000.1, providing a reference point for researchers interested in studying its genetic makeup and functional capabilities. The presence of a flagellum suggests that this bacterium can navigate its environment effectively, which may be crucial for survival in the often cold and nutrient-limited habitats it inhabits. Ecologically, Shewanella species are known for their versatility in electron transport and their ability to thrive in diverse conditions, including those found in marine and polar regions. The adaptation mechanisms exhibited by Shewanella psychromarinicola strain R106 may play an essential role in biogeochemical cycles, particularly in the degradation of organic matter and the reduction of metal ions, contributing to nutrient cycling in cold marine ecosystems. Understanding the specific traits and capabilities of this strain enhances our knowledge of microbial life in extreme environments and its ecological significance.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAlteromonadales
FamilyShewanellaceae
GenusShewanella
SpeciesShewanella psychromarinicola
Strainstrain R106

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Shewanella psychromarinicola strain R106 ctg_53, whole genome

Gene Summary

Adenine Count

1483097 bp

Thymine Count

1465334 bp

Guanine Count

1053799 bp

Cytosine Count

1092394 bp

Genome Length

5098660 bp

Protein-coding Genes

4203 genes

Non-Coding Genes

106 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
duf2058 domain-containing proteinEGC77_12910Not AvailablePositive2935452 - 293600320744.7
nickel pincer cofactor biosynthesis protein larcEGC77_12920Not AvailablePositive2937437 - 293880751693.0
atp-dependent sacrificial sulfur transferase lareEGC77_12925Not AvailablePositive2938874 - 293965929516.7
nickel pincer cofactor biosynthesis protein larbEGC77_12930Not AvailablePositive2939673 - 294041926693.8
nickel-dependent lactate racemaseEGC77_12935Not AvailablePositive2940525 - 294180246697.3
duf1840 domain-containing proteinEGC77_12940Not AvailableNegative2942251 - 294256511255.5
hypothetical proteinEGC77_12945Not AvailableNegative2943354 - 294430735699.1
acyl-coa dehydrogenaseEGC77_12950Not AvailablePositive2944600 - 294635763203.3
hydrogenase maturation nickel metallochaperone hypaEGC77_12955Not AvailableNegative2946865 - 294720912862.8
hydrogenase expression/formation protein hypeEGC77_12960Not AvailableNegative2947209 - 294821636003.5

Displaying genes 2501 – 2510 of 4309 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.