Shewanella psychromarinicola strain R106

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Alteromonadales

Family

Shewanellaceae

Genus

Shewanella

Description

Shewanella psychromarinicola strain R106 is a notable bacterium characterized by the presence of flagella, which enables motility and potentially enhances its ecological adaptability in various environments. This strain possesses a single replicon, indicating a streamlined genomic organization that may facilitate efficient replication and gene expression. The genomic information for Shewanella psychromarinicola strain R106 is cataloged under the accession number RKKB00000000.1, providing a reference point for researchers interested in studying its genetic makeup and functional capabilities. The presence of a flagellum suggests that this bacterium can navigate its environment effectively, which may be crucial for survival in the often cold and nutrient-limited habitats it inhabits. Ecologically, Shewanella species are known for their versatility in electron transport and their ability to thrive in diverse conditions, including those found in marine and polar regions. The adaptation mechanisms exhibited by Shewanella psychromarinicola strain R106 may play an essential role in biogeochemical cycles, particularly in the degradation of organic matter and the reduction of metal ions, contributing to nutrient cycling in cold marine ecosystems. Understanding the specific traits and capabilities of this strain enhances our knowledge of microbial life in extreme environments and its ecological significance.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAlteromonadales
FamilyShewanellaceae
GenusShewanella
SpeciesShewanella psychromarinicola
Strainstrain R106

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Shewanella psychromarinicola strain R106 ctg_53, whole genome

Gene Summary

Adenine Count

1483097 bp

Thymine Count

1465334 bp

Guanine Count

1053799 bp

Cytosine Count

1092394 bp

Genome Length

5098660 bp

Protein-coding Genes

4203 genes

Non-Coding Genes

106 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
terb family tellurite resistance proteinEGC77_09695Not AvailablePositive2195066 - 219551516849.2
l-methionine/branched-chain amino acid transporterEGC77_09700Not AvailableNegative2195532 - 219680945331.3
2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthaseEGC77_09705Not AvailablePositive2197510 - 219924963771.5
2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthaseEGC77_09710Not AvailablePositive2199249 - 220005530041.4
o-succinylbenzoate synthaseEGC77_09715Not AvailablePositive2200058 - 220115239815.4
o-succinylbenzoate--coa ligaseEGC77_09720Not AvailablePositive2201155 - 220268455216.5
rna polymerase sigma factor rpohEGC77_09725Not AvailableNegative2202901 - 220375832092.1
cell division protein ftsxEGC77_09730Not AvailableNegative2203989 - 220495435744.2
cell division atp-binding protein ftseEGC77_09735Not AvailableNegative2204951 - 220564025154.9
signal recognition particle-docking protein ftsyEGC77_09740Not AvailableNegative2205644 - 220726359061.2

Displaying genes 1891 – 1900 of 4309 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.