Yersinia pestis strain FDAARGOS_605 tig00000001_pilon

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Yersiniaceae

Genus

Yersinia

Description

Yersinia pestis strain FDAARGOS_605 (tig00000001_pilon) is a notable pathogenic bacterium primarily recognized as the causative agent of the plague, including its various forms such as bubonic, septicemic, and pneumonic plague. This organism is classified as a Gram-negative rod-shaped bacterium, known for its facultative anaerobic metabolism as a heterotroph, allowing it to thrive in diverse environments. Characteristically, Yersinia pestis is free-living and exhibits mobility due to the presence of flagella. It typically exists as single cells, demonstrating its adaptability in multiple habitats. The bacterium has a mesophilic temperature range, with an optimal growth temperature around 28°C, which may influence its ecology and interactions with hosts. The strain is capable of infecting a range of hosts, including Homo sapiens (humans), Siphonaptera (fleas), Metazoa (multicellular organisms), Mammalia (mammals), and even Caenorhabditis elegans (a model organism for biological studies). This broad host range underscores the ecological versatility and potential for transmission of Yersinia pestis. Given its historical significance, having contributed to epidemics such as the Justinianic plague and the Black Death, the understanding of Yersinia pestis strain FDAARGOS_605 is crucial for public health and epidemiology. Its pathogenic potential and relationship with various hosts illustrate the complex dynamics between microbial pathogens and their environments, emphasizing the importance of continued research in controlling and preventing plague outbreaks.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyYersiniaceae
GenusYersinia
SpeciesYersinia pestis
Strainstrain FDAARGOS_605 tig00000001_pilon

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Yersinia pestis strain FDAARGOS_605 tig00000001_pilon
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature28
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Homo sapiens, Siphonaptera, Metazoa
Cell arrangementSingles
SporulationNot Available
Energy sourceHeterotroph
PathogenicityNot Available

Genome Summary

Yersinia pestis strain FDAARGOS_605 tig00000001_pilon, whole

Gene Summary

Adenine Count

1273981 bp

Thymine Count

1272816 bp

Guanine Count

1146636 bp

Cytosine Count

1170078 bp

Genome Length

4863748 bp

Protein-coding Genes

4223 genes

Non-Coding Genes

259 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
bifunctional isocitrate dehydrogenase kinase/phosphataseEGT45_01725Not AvailablePositive291753 - 29348067626.1
methionine synthaseEGT45_01735Not AvailablePositive294659 - 298354136157.0
filamentous hemagglutinin n-terminal domain-containing proteinEGT45_01740Not AvailableNegative298450 - 303357172234.0
shlb/fhac/hecb family hemolysin secretion/activation proteinEGT45_01745Not AvailableNegative303427 - 30511262470.6
coproporphyrinogen iii oxidaseEGT45_01750Not AvailablePositive305218 - 3052922522.09
is21 family transposase is100EGT45_01755Not AvailablePositive305306 - 30632839903.2
aaa family atpaseEGT45_01760Not AvailablePositive306325 - 30710729427.8
lysine-sensitive aspartokinase 3EGT45_01765Not AvailableNegative307639 - 30902449693.7
glucose-6-phosphate isomeraseEGT45_01770Not AvailablePositive309394 - 31104061164.4
phosphate-starvation-inducible protein psieEGT45_01775Not AvailablePositive311175 - 31158215648.7

Displaying genes 411 – 420 of 4487 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
PlagueCausesPMC10229654
Bubonic plagueCausesPMC10229654
Septicaemic plagueCausesPMC10229654
Pneumonic plagueCausesPMC10229654
Justinianic plagueCausesPMC10229654
Black deathCausesPMC10229654
PlagueCausesPMC3047566
Black deathCausesPMC3216949
PlagueCausesPMC3216949
PlagueCausesPMC4644222

Displaying health effects 1 – 10 of 31 in total