Yersinia pestis strain FDAARGOS_605 tig00000001_pilon

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Yersiniaceae

Genus

Yersinia

Description

Yersinia pestis strain FDAARGOS_605 (tig00000001_pilon) is a notable pathogenic bacterium primarily recognized as the causative agent of the plague, including its various forms such as bubonic, septicemic, and pneumonic plague. This organism is classified as a Gram-negative rod-shaped bacterium, known for its facultative anaerobic metabolism as a heterotroph, allowing it to thrive in diverse environments. Characteristically, Yersinia pestis is free-living and exhibits mobility due to the presence of flagella. It typically exists as single cells, demonstrating its adaptability in multiple habitats. The bacterium has a mesophilic temperature range, with an optimal growth temperature around 28°C, which may influence its ecology and interactions with hosts. The strain is capable of infecting a range of hosts, including Homo sapiens (humans), Siphonaptera (fleas), Metazoa (multicellular organisms), Mammalia (mammals), and even Caenorhabditis elegans (a model organism for biological studies). This broad host range underscores the ecological versatility and potential for transmission of Yersinia pestis. Given its historical significance, having contributed to epidemics such as the Justinianic plague and the Black Death, the understanding of Yersinia pestis strain FDAARGOS_605 is crucial for public health and epidemiology. Its pathogenic potential and relationship with various hosts illustrate the complex dynamics between microbial pathogens and their environments, emphasizing the importance of continued research in controlling and preventing plague outbreaks.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyYersiniaceae
GenusYersinia
SpeciesYersinia pestis
Strainstrain FDAARGOS_605 tig00000001_pilon

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Yersinia pestis strain FDAARGOS_605 tig00000001_pilon
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature28
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Homo sapiens, Siphonaptera, Metazoa
Cell arrangementSingles
SporulationNot Available
Energy sourceHeterotroph
PathogenicityNot Available

Genome Summary

Yersinia pestis strain FDAARGOS_605 tig00000001_pilon, whole

Gene Summary

Adenine Count

1273981 bp

Thymine Count

1272816 bp

Guanine Count

1146636 bp

Cytosine Count

1170078 bp

Genome Length

4863748 bp

Protein-coding Genes

4223 genes

Non-Coding Genes

259 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Phage baseplate assembly proteinEGT45_12650Not AvailablePositive2559299 - 255959811187.6
Putative tail-fiber proteinEGT45_12655Not AvailablePositive2559615 - 255990210539.8
hypothetical proteinEGT45_12660Not AvailablePositive2560337 - 25605527482.16
duf2778 domain-containing proteinEGT45_12665Not AvailablePositive2560501 - 256085413205.9
hypothetical proteinEGT45_12670Not AvailablePositive2560859 - 25611139796.19
Major tail sheath proteinEGT45_12675Not AvailablePositive2561278 - 25614004363.12
Putative transposase orfbEGT45_12680Not AvailablePositive2561466 - 256297958027.1
type vi secretion system tube protein hcpEGT45_12685Not AvailablePositive2563199 - 256354312833.3
hypothetical proteinEGT45_12690Not AvailablePositive2563569 - 25637577282.77
hypothetical proteinEGT45_12695Not AvailableNegative2563787 - 25639697323.46

Displaying genes 161 – 170 of 4487 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
PlagueCausesPMC10229654
Bubonic plagueCausesPMC10229654
Septicaemic plagueCausesPMC10229654
Pneumonic plagueCausesPMC10229654
Justinianic plagueCausesPMC10229654
Black deathCausesPMC10229654
PlagueCausesPMC3047566
Black deathCausesPMC3216949
PlagueCausesPMC3216949
PlagueCausesPMC4644222

Displaying health effects 1 – 10 of 31 in total