Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain FDAARGOS_539 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1317960 bp
Thymine Count
1314735 bp
Guanine Count
1357469 bp
Cytosine Count
1360213 bp
Genome Length
5350663 bp
Protein-coding Genes
4723 genes
Non-Coding Genes
534 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ribose abc transporter atp-binding protein rbsa | EGT48_15355 | Not Available | Positive | 3012371 - 3013876 | 55071.1 |
| ribose abc transporter permease | EGT48_15360 | Not Available | Positive | 3013881 - 3014846 | 33454.0 |
| ribose abc transporter substrate-binding protein rbsb | EGT48_15365 | Not Available | Positive | 3014871 - 3015761 | 30940.2 |
| ribokinase | EGT48_15370 | Not Available | Positive | 3015887 - 3016816 | 32282.3 |
| ribose operon repressor | EGT48_15375 | Not Available | Positive | 3016820 - 3017812 | 36614.1 |
| dha2 family efflux mfs transporter permease subunit | EGT48_15380 | Not Available | Negative | 3017778 - 3019205 | 51582.0 |
| transcriptional regulator | EGT48_15385 | Not Available | Negative | 3019228 - 3019920 | 26077.5 |
| Trna-glu | Not Available | Not Available | Positive | 3022028 - 3022103 | Not Available |
| Trna-asp | Not Available | Not Available | Positive | 3025471 - 3025547 | Not Available |
| Trna-trp | Not Available | Not Available | Positive | 3025556 - 3025631 | Not Available |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





