Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain FDAARGOS_539 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1317960 bp
Thymine Count
1314735 bp
Guanine Count
1357469 bp
Cytosine Count
1360213 bp
Genome Length
5350663 bp
Protein-coding Genes
4723 genes
Non-Coding Genes
534 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dotu family type iv/vi secretion system protein | EGT48_09810 | Not Available | Positive | 1876780 - 1877445 | 25295.7 |
| ompa family protein | EGT48_09815 | Not Available | Positive | 1877458 - 1879110 | 60548.4 |
| hcp family type vi secretion system effector | EGT48_09820 | Not Available | Positive | 1879168 - 1879659 | 18649.9 |
| type vi secretion system atpase tssh | EGT48_09825 | Not Available | Positive | 1879850 - 1882486 | 97526.9 |
| type vi secretion system tip protein vgrg | EGT48_09830 | Not Available | Positive | 1882498 - 1884822 | 86099.1 |
| m23 family peptidase | EGT48_09835 | Not Available | Positive | 1884834 - 1887197 | 89050.8 |
| hypothetical protein | EGT48_09840 | Not Available | Positive | 1887194 - 1888051 | 32220.4 |
| type vi secretion system tip protein vgrg | EGT48_09845 | Not Available | Positive | 1888515 - 1890893 | 87757.1 |
| duf4123 domain-containing protein | EGT48_09850 | Not Available | Positive | 1890896 - 1891717 | 31616.6 |
| duf3304 domain-containing protein | EGT48_09855 | Not Available | Positive | 1891761 - 1892288 | 19559.6 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





