Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain FDAARGOS_539 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1317960 bp
Thymine Count
1314735 bp
Guanine Count
1357469 bp
Cytosine Count
1360213 bp
Genome Length
5350663 bp
Protein-coding Genes
4723 genes
Non-Coding Genes
534 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nadp-dependent succinate-semialdehyde dehydrogenase i | EGT48_09000 | Not Available | Positive | 1719243 - 1720691 | 51809.1 |
| 4-aminobutyrate--2-oxoglutarate transaminase | EGT48_09005 | Not Available | Positive | 1720705 - 1721985 | 45672.5 |
| gaba permease | EGT48_09010 | Not Available | Positive | 1722222 - 1723622 | 51145.2 |
| dna-binding transcriptional regulator csir | EGT48_09015 | Not Available | Positive | 1723643 - 1724305 | 25018.4 |
| peptidoglycan-binding protein lysm | EGT48_09020 | Not Available | Negative | 1724306 - 1724755 | 16064.0 |
| yqae/pmp3 family membrane protein | EGT48_09025 | Not Available | Negative | 1724839 - 1724997 | 5865.57 |
| transcriptional regulator | EGT48_09030 | Not Available | Positive | 1725180 - 1725479 | 10571.0 |
| rhodanese-like domain-containing protein ygap | EGT48_09035 | Not Available | Positive | 1725489 - 1726013 | 18693.0 |
| dna-binding protein stpa | EGT48_09040 | Not Available | Negative | 1726060 - 1726464 | 15360.5 |
| l-alanine exporter alae | EGT48_09045 | Not Available | Positive | 1727132 - 1727581 | 16950.0 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





