Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain FDAARGOS_539 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1317960 bp
Thymine Count
1314735 bp
Guanine Count
1357469 bp
Cytosine Count
1360213 bp
Genome Length
5350663 bp
Protein-coding Genes
4723 genes
Non-Coding Genes
534 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ssra-binding protein smpb | EGT48_08685 | Not Available | Positive | 1669472 - 1669954 | 18270.1 |
| Tmrna,resume consensus sequence (at 83): aatagtcgcaaacgacga | Not Available | Not Available | Positive | 1670169 - 1670531 | Not Available |
| hypothetical protein | EGT48_08695 | Not Available | Positive | 1670832 - 1671101 | 9948.3 |
| type ii toxin-antitoxin system rnlb family antitoxin | EGT48_08700 | Not Available | Negative | 1671239 - 1671601 | 13305.0 |
| type ii toxin-antitoxin system rnla family toxin | EGT48_08705 | Not Available | Negative | 1671594 - 1672664 | 40477.8 |
| hypothetical protein | EGT48_08710 | Not Available | Negative | 1672724 - 1672879 | 6043.13 |
| tail fiber assembly protein | EGT48_08715 | Not Available | Negative | 1673065 - 1673649 | 21448.0 |
| hypothetical protein | EGT48_08985 | Not Available | Negative | 1716250 - 1716456 | 7062.57 |
| carbon starvation induced protein csid | EGT48_08990 | Not Available | Positive | 1716955 - 1717932 | 37348.6 |
| l-2-hydroxyglutarate oxidase | EGT48_08995 | Not Available | Positive | 1717952 - 1719217 | 46010.7 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





