Frigoribacterium sp. PhB118

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Microbacteriaceae

Genus

Frigoribacterium

Description

Frigoribacterium sp. PhB118 is characterized by having a single replicon, which indicates a streamlined genetic structure. Its genomic sequence is cataloged under the accession number RKID00000000.1, providing a unique identifier for researchers interested in studying its genetic makeup and potential applications. While specific metabolic pathways and ecological roles of Frigoribacterium sp. PhB118 are not detailed in the available data, the genus Frigoribacterium is generally associated with cold-adapted bacteria, often found in polar or cold environments. This adaptability suggests potential applications in biotechnology, particularly in processes requiring low-temperature conditions, such as bioremediation or the production of cold-active enzymes. The presence of a single replicon may also imply a simpler regulatory and replication mechanism, which could be advantageous for survival in extreme environments. Understanding the genomic characteristics of Frigoribacterium sp. PhB118 could provide insights into how microorganisms adapt to cold habitats and their potential roles in nutrient cycling within these ecosystems. This knowledge can contribute to broader ecological studies on microbial diversity and resilience in the face of climate change.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrobacteriaceae
GenusFrigoribacterium
SpeciesFrigoribacterium sp. PhB118
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Frigoribacterium sp. PhB118 Ga0304878_113, whole genome shotgun

Gene Summary

Adenine Count

508940 bp

Thymine Count

508156 bp

Guanine Count

1257613 bp

Cytosine Count

1242393 bp

Genome Length

3518026 bp

Protein-coding Genes

3245 genes

Non-Coding Genes

56 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
16s rrna (uracil1498-n3)-methyltransferaseEDF21_0513Not AvailableNegative569073 - 56981625868.0
molecular chaperone dnajEDF21_0514Not AvailableNegative569819 - 57092839747.9
heat-inducible transcription repressor hrcaEDF21_0515Not AvailableNegative571038 - 57206036592.8
hypothetical proteinEDF21_0516Not AvailablePositive572241 - 57274417869.8
oxygen-independent coproporphyrinogen-3 oxidaseEDF21_0517Not AvailableNegative572865 - 57409144784.4
uncharacterized protein (upf0548 family)EDF21_0518Not AvailableNegative574094 - 57486728337.7
gtp-binding protein lepaEDF21_0519Not AvailableNegative574873 - 57672367524.6
uncharacterized protein duf4190EDF21_0520Not AvailableNegative577164 - 57747210286.9
aspartate aminotransferaseEDF21_0521Not AvailableNegative577527 - 57867841750.6
ssu ribosomal protein s20pEDF21_0522Not AvailablePositive578922 - 5791829153.14

Displaying genes 521 – 530 of 3301 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.