Frigoribacterium sp. PhB118

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Microbacteriaceae

Genus

Frigoribacterium

Description

Frigoribacterium sp. PhB118 is characterized by having a single replicon, which indicates a streamlined genetic structure. Its genomic sequence is cataloged under the accession number RKID00000000.1, providing a unique identifier for researchers interested in studying its genetic makeup and potential applications. While specific metabolic pathways and ecological roles of Frigoribacterium sp. PhB118 are not detailed in the available data, the genus Frigoribacterium is generally associated with cold-adapted bacteria, often found in polar or cold environments. This adaptability suggests potential applications in biotechnology, particularly in processes requiring low-temperature conditions, such as bioremediation or the production of cold-active enzymes. The presence of a single replicon may also imply a simpler regulatory and replication mechanism, which could be advantageous for survival in extreme environments. Understanding the genomic characteristics of Frigoribacterium sp. PhB118 could provide insights into how microorganisms adapt to cold habitats and their potential roles in nutrient cycling within these ecosystems. This knowledge can contribute to broader ecological studies on microbial diversity and resilience in the face of climate change.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrobacteriaceae
GenusFrigoribacterium
SpeciesFrigoribacterium sp. PhB118
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Frigoribacterium sp. PhB118 Ga0304878_113, whole genome shotgun

Gene Summary

Adenine Count

508940 bp

Thymine Count

508156 bp

Guanine Count

1257613 bp

Cytosine Count

1242393 bp

Genome Length

3518026 bp

Protein-coding Genes

3245 genes

Non-Coding Genes

56 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ig-like domain-containing proteinEDF21_3023Not AvailablePositive3199480 - 320150167301.2
nad(p)-dependent dehydrogenase (short-subunit alcohol dehydrogenase family)EDF21_3024Not AvailableNegative3201731 - 320251627200.2
beta-glucosidaseEDF21_3025Not AvailableNegative3202790 - 320520784306.8
carbohydrate abc transporter membrane protein 2 (cut1 family)EDF21_3026Not AvailableNegative3205204 - 320610931899.6
raffinose/stachyose/melibiose transport system permease proteinEDF21_3027Not AvailableNegative3206106 - 320714036854.3
carbohydrate abc transporter substrate-binding protein (cut1 family)EDF21_3028Not AvailableNegative3207151 - 320843744528.3
laci family transcriptional regulatorEDF21_3029Not AvailablePositive3208585 - 320959234991.9
hypothetical proteinEDF21_3030Not AvailablePositive3209652 - 321029323106.6
hypothetical proteinEDF21_3031Not AvailablePositive3210290 - 321101525812.0
hypothetical proteinEDF21_3032Not AvailablePositive3211160 - 32113877925.19

Displaying genes 3011 – 3020 of 3301 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.