Frigoribacterium sp. PhB118

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Microbacteriaceae

Genus

Frigoribacterium

Description

Frigoribacterium sp. PhB118 is characterized by having a single replicon, which indicates a streamlined genetic structure. Its genomic sequence is cataloged under the accession number RKID00000000.1, providing a unique identifier for researchers interested in studying its genetic makeup and potential applications. While specific metabolic pathways and ecological roles of Frigoribacterium sp. PhB118 are not detailed in the available data, the genus Frigoribacterium is generally associated with cold-adapted bacteria, often found in polar or cold environments. This adaptability suggests potential applications in biotechnology, particularly in processes requiring low-temperature conditions, such as bioremediation or the production of cold-active enzymes. The presence of a single replicon may also imply a simpler regulatory and replication mechanism, which could be advantageous for survival in extreme environments. Understanding the genomic characteristics of Frigoribacterium sp. PhB118 could provide insights into how microorganisms adapt to cold habitats and their potential roles in nutrient cycling within these ecosystems. This knowledge can contribute to broader ecological studies on microbial diversity and resilience in the face of climate change.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrobacteriaceae
GenusFrigoribacterium
SpeciesFrigoribacterium sp. PhB118
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Frigoribacterium sp. PhB118 Ga0304878_113, whole genome shotgun

Gene Summary

Adenine Count

508940 bp

Thymine Count

508156 bp

Guanine Count

1257613 bp

Cytosine Count

1242393 bp

Genome Length

3518026 bp

Protein-coding Genes

3245 genes

Non-Coding Genes

56 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
rpir family transcriptional regulatorEDF21_2239Not AvailableNegative2360941 - 236189132860.6
allantoate deiminaseEDF21_2240Not AvailableNegative2361888 - 236314444122.2
(s)-ureidoglycine-glyoxylate aminotransferaseEDF21_2241Not AvailableNegative2363141 - 236443946465.7
asp-trna(asn)/glu-trna(gln) amidotransferase a subunit family amidaseEDF21_2242Not AvailableNegative2364453 - 236611156293.4
acetamidase/formamidaseEDF21_2243Not AvailableNegative2366104 - 236724939250.6
urate oxidaseEDF21_2244Not AvailablePositive2367363 - 236825633029.8
guanine deaminaseEDF21_2245Not AvailablePositive2368307 - 236878317211.8
5-hydroxyisourate hydrolaseEDF21_2246Not AvailableNegative2368802 - 236912811569.5
2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylaseEDF21_2247Not AvailableNegative2369125 - 236977822301.5
co/xanthine dehydrogenase fad-binding subunitEDF21_2248Not AvailablePositive2370169 - 237110133162.5

Displaying genes 2231 – 2240 of 3301 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.