Frigoribacterium sp. PhB118

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Microbacteriaceae

Genus

Frigoribacterium

Description

Frigoribacterium sp. PhB118 is characterized by having a single replicon, which indicates a streamlined genetic structure. Its genomic sequence is cataloged under the accession number RKID00000000.1, providing a unique identifier for researchers interested in studying its genetic makeup and potential applications. While specific metabolic pathways and ecological roles of Frigoribacterium sp. PhB118 are not detailed in the available data, the genus Frigoribacterium is generally associated with cold-adapted bacteria, often found in polar or cold environments. This adaptability suggests potential applications in biotechnology, particularly in processes requiring low-temperature conditions, such as bioremediation or the production of cold-active enzymes. The presence of a single replicon may also imply a simpler regulatory and replication mechanism, which could be advantageous for survival in extreme environments. Understanding the genomic characteristics of Frigoribacterium sp. PhB118 could provide insights into how microorganisms adapt to cold habitats and their potential roles in nutrient cycling within these ecosystems. This knowledge can contribute to broader ecological studies on microbial diversity and resilience in the face of climate change.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrobacteriaceae
GenusFrigoribacterium
SpeciesFrigoribacterium sp. PhB118
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Frigoribacterium sp. PhB118 Ga0304878_113, whole genome shotgun

Gene Summary

Adenine Count

508940 bp

Thymine Count

508156 bp

Guanine Count

1257613 bp

Cytosine Count

1242393 bp

Genome Length

3518026 bp

Protein-coding Genes

3245 genes

Non-Coding Genes

56 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
trna threonylcarbamoyladenosine biosynthesis protein tsaeEDF21_2069Not AvailableNegative2195080 - 219564319442.7
alanine racemaseEDF21_2070Not AvailableNegative2195640 - 219677639934.5
alanine racemaseEDF21_2071Not AvailableNegative2196773 - 219786438019.1
holo-[acyl-carrier protein] synthaseEDF21_2072Not AvailableNegative2197861 - 219827414356.9
glucosamine--fructose-6-phosphate aminotransferase (isomerizing)EDF21_2073Not AvailableNegative2198322 - 220017565681.7
pantothenate kinaseEDF21_2074Not AvailablePositive2200259 - 220121535653.7
phosphoglucosamine mutaseEDF21_2075Not AvailableNegative2201325 - 220268647122.1
small subunit ribosomal protein s9EDF21_2076Not AvailableNegative2202714 - 220319917196.6
large subunit ribosomal protein l13EDF21_2077Not AvailableNegative2203232 - 220367816243.7
trna pseudouridine38-40 synthaseEDF21_2078Not AvailableNegative2203874 - 220477332947.1

Displaying genes 2061 – 2070 of 3301 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.