Chryseobacterium nakagawai strain BIGb0215

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Weeksellaceae

Genus

Chryseobacterium

Description

Chryseobacterium nakagawai strain BIGb0215 is characterized as a rod-shaped bacterium. It is notable for possessing a single replicon, which indicates a streamlined genomic structure that may contribute to its adaptability and survival in various environments. The strain is cataloged under the accession number RKHU00000000.1, serving as a reference for researchers studying this organism. Chryseobacterium species are known for their diverse ecological roles and can be found in various habitats, including soil, water, and as part of the microbiota of plants and animals. The rod shape of C. nakagawai suggests a potential for motility and interaction with its environment, which could be advantageous for nutrient acquisition and colonization. The study of C. nakagawai strain BIGb0215 could provide insights into its metabolic capabilities and ecological interactions. Understanding its characteristics and genomic features may shed light on its role within microbial communities and its potential applications in biotechnology or environmental science.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyWeeksellaceae
GenusChryseobacterium
SpeciesChryseobacterium nakagawai
Strainstrain BIGb0215

Profile

Physiology
Gram staining propertiesNot Available
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Chryseobacterium nakagawai strain BIGb0215 Ga0304820_114, whole

Gene Summary

Adenine Count

1862885 bp

Thymine Count

1846765 bp

Guanine Count

1045443 bp

Cytosine Count

1023757 bp

Genome Length

5779812 bp

Protein-coding Genes

5034 genes

Non-Coding Genes

99 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
rna polymerase sigma-70 factor (ecf subfamily)EDF65_2983Not AvailableNegative3296079 - 329663021872.1
putative short-subunit dehydrogenase-like oxidoreductase (duf2520 family)EDF65_2984Not AvailablePositive3296813 - 329756528728.4
3-deoxy-d-manno-octulosonate 8-phosphate phosphatase (kdo 8-p phosphatase)EDF65_2985Not AvailablePositive3297555 - 329807319203.0
septum formation proteinEDF65_2986Not AvailablePositive3298082 - 329864521006.2
tetratricopeptide repeat proteinEDF65_2987Not AvailablePositive3298792 - 330137497071.7
trna threonylcarbamoyladenosine biosynthesis protein tsabEDF65_2988Not AvailableNegative3301442 - 330215826879.1
nadp-dependent 3-hydroxy acid dehydrogenase ydfgEDF65_2989Not AvailableNegative3302205 - 330295427064.6
putative endonucleaseEDF65_2990Not AvailableNegative3303077 - 330344813985.6
muramoyltetrapeptide carboxypeptidaseEDF65_2991Not AvailableNegative3303485 - 330441434601.1
threonine/homoserine/homoserine lactone efflux proteinEDF65_2992Not AvailableNegative3304411 - 330509726148.8

Displaying genes 2941 – 2950 of 5131 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.